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plex.h
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#ifndef VIENNA_RNA_PACKAGE_PLEX_H
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#define VIENNA_RNA_PACKAGE_PLEX_H
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#include <
ViennaRNA/data_structures.h
>
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extern
int
subopt_sorted
;
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duplexT
** Lduplexfold(
const
char
*s1,
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const
char
*s2,
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const
int
threshold,
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const
int
extension_cost,
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const
int
alignment_length,
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const
int
delta,
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const
int
fast,
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const
int
il_a,
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const
int
il_b,
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const
int
b_a,
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const
int
b_b);
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duplexT
** Lduplexfold_XS(
const
char
*s1,
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const
char
* s2,
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const
int
**access_s1,
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const
int
**access_s2,
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const
int
threshold,
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const
int
delta,
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const
int
alignment_length,
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const
int
fast,
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const
int
il_a,
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const
int
il_b,
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const
int
b_a,
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const
int
b_b);
/* , const int target_dead, const int query_dead); */
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duplexT
** Lduplexfold_C(
const
char
*s1,
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const
char
*s2,
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const
int
threshold,
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const
int
extension_cost,
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const
int
alignment_length,
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const
int
delta,
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const
int
fast,
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const
char
* structure,
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const
int
il_a,
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const
int
il_b,
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const
int
b_a,
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const
int
b_b);
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duplexT
** Lduplexfold_CXS(
const
char
*s1,
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const
char
* s2,
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const
int
**access_s1,
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const
int
**access_s2,
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const
int
threshold,
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const
int
delta,
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const
int
alignment_length,
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const
int
fast,
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const
char
* structure,
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const
int
il_a,
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const
int
il_b,
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const
int
b_a,
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const
int
b_b);
/*, const int target_dead, const int query_dead); */
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int
arraySize(
duplexT
** array);
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void
freeDuplexT(
duplexT
** array);
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#endif
subopt_sorted
int subopt_sorted
Sort output by energy.
data_structures.h
duplexT
Definition:
data_structures.h:260
ViennaRNA
plex.h
Generated on Wed Jun 29 2016 15:18:03 for RNAlib-2.2.7 by
1.8.9.1