1 #ifndef VIENNA_RNA_PACKAGE_OLD_EPARS__
2 #define VIENNA_RNA_PACKAGE_OLD_EPARS__
49 PRIVATE
double Tmeasure_184 = 37 +
K0;
50 PRIVATE
double lxc37_184 = 107.856;
56 {
INF, -240, -330, -210, -140, -210, -210, NST},
57 {
INF, -330, -340, -250, -150, -220, -240, NST},
58 {
INF, -210, -250, 130, -50, -140, -130, NST},
59 {
INF, -140, -150, -50, 30, -60, -100, NST},
60 {
INF, -210, -220, -140, -60, -110, -90, NST},
61 {
INF, -210, -240, -130, -100, -90, -130, NST},
62 {
INF, NST, NST, NST, NST, NST, NST, NST}};
69 {
INF, -1060, -1340, -1210, -560, -1050, -1040, NST},
70 {
INF, -1340, -1490, -1260, -830, -1140, -1240, NST},
71 {
INF, -1210, -1260, -1460, -1350, -880, -1280, NST},
72 {
INF, -560, -830, -1350, -930, -320, -700, NST},
73 {
INF, -1050, -1140, -880, -320, -940, -680, NST},
74 {
INF, -1040, -1240, -1280, -700, -680, -770, NST},
75 {
INF, NST, NST, NST, NST, NST, NST, NST}};
79 PRIVATE
int oldhairpin37_184[31] = {
80 INF,
INF,
INF, 410, 490, 440, 470, 500, 510, 520, 531,
81 542, 551, 560, 568, 575, 582, 589, 595, 601, 606,
82 611, 616, 621, 626, 630, 634, 638, 642, 646, 650};
84 PRIVATE
int hairpin37_184[31] = {
85 INF,
INF,
INF, 570, 560, 560, 540, 590, 560, 640, 650,
86 660, 670, 678, 686, 694, 701, 707, 713, 719, 725,
87 730, 735, 740, 744, 749, 753, 757, 761, 765, 769};
89 PRIVATE
int oldbulge37_184[31] = {
90 INF, 390, 310, 350, 420, 480, 500, 516, 531, 543, 555,
91 565, 574, 583, 591, 598, 605, 612, 618, 624, 630,
92 635, 640, 645, 649, 654, 658, 662, 666, 670, 673};
94 PRIVATE
int bulge37_184[31] = {
95 INF, 380, 280, 320, 360, 400, 440, 459, 470, 480, 490,
96 500, 510, 519, 527, 534, 541, 548, 554, 560, 565,
97 571, 576, 580, 585, 589, 594, 598, 602, 605, 609};
99 PRIVATE
int oldinternal_loop37_184[31] = {
100 INF,
INF, 410, 510, 490, 530, 570, 587, 601, 614, 625,
101 635, 645, 653, 661, 669, 676, 682, 688, 694, 700,
102 705, 710, 715, 720, 724, 728, 732, 736, 740, 744};
104 PRIVATE
int internal_loop37_184[31] = {
105 INF,
INF, 410, 510, 170, 180, 200, 220, 230, 240, 250,
106 260, 270, 278, 286, 294, 301, 307, 313, 319, 325,
107 330, 335, 340, 345, 349, 353, 357, 361, 365, 369};
111 PRIVATE
int mismatchI37_184[
NBPAIRS+1][5][5] =
113 {{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},
128 { 0, 70, 70, -40, 70},
129 { 0, 70, 70, 70, 70},
130 { 0, -40, 70, 70, 70},
131 { 0, 70, 70, 70, 0}},
134 { 0, 70, 70, -40, 70},
135 { 0, 70, 70, 70, 70},
136 { 0, -40, 70, 70, 70},
137 { 0, 70, 70, 70, 0}},
140 { 0, 70, 70, -40, 70},
141 { 0, 70, 70, 70, 70},
142 { 0, -40, 70, 70, 70},
143 { 0, 70, 70, 70, 0}},
146 { 0, 70, 70, -40, 70},
147 { 0, 70, 70, 70, 70},
148 { 0, -40, 70, 70, 70},
149 { 0, 70, 70, 70, 0}},
151 { 90, 90, 90, 90, 90},{ 90, 90, 90, 90,-20},{ 90, 90, 90, 90, 90},
152 { 90,-20, 90, 90, 90},{ 90, 90, 90, 90, 20}}
156 PRIVATE
int mismatchH37_184[
NBPAIRS+1][5][5] =
158 {{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},
161 { -90, -150, -150, -140, -180},
162 { -90, -100, -90, -290, -80},
163 { -90, -220, -200, -160, -110},
164 { -90, -170, -140, -180, -200}},
167 { -70, -110, -150, -130, -210},
168 { -70, -110, -70, -240, -50},
169 { -70, -240, -290, -140, -120},
170 { -70, -190, -100, -220, -150}},
173 { 0, 20, -50, -30, -30},
174 { 0, -10, -20, -150, -20},
175 { 0, -90, -110, -30, 0},
176 { 0, -30, -30, -40, -110}},
179 { 0, -50, -30, -60, -50},
180 { 0, -20, -10, -170, 0},
181 { 0, -80, -120, -30, -70},
182 { 0, -60, -10, -60, -80}},
185 { 0, -30, -50, -30, -30},
186 { 0, -10, -20, -150, -20},
187 { 0, -110, -120, -20, 20},
188 { 0, -30, -30, -60, -110}},
191 { 0, -50, -30, -60, -50},
192 { 0, -20, -10, -120, -0},
193 { 0, -140, -120, -70, -20},
194 { 0, -30, -10, -50, -80}},
196 { 0, 0, 0, 0, 0},{ 0, 0, 0, 0, 0},{ 0, 0, 0, 0, 0},
197 { 0, 0, 0, 0, 0},{ 0, 0, 0, 0, 0}}
201 PRIVATE
int mismatchM37_184[
NBPAIRS+1][5][5];
205 PRIVATE
int mism_H_184[
NBPAIRS+1][5][5] =
207 {{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},
210 { DEF,-1030, -950,-1030,-1030},
211 { DEF, -520, -450, -520, -670},
212 { DEF, -940, -940, -940, -940},
213 { DEF, -810, -740, -810, -860}},
216 { DEF, -520, -880, -560, -880},
217 { DEF, -720, -310, -310, -390},
218 { DEF, -710, -740, -620, -740},
219 { DEF, -500, -500, -500, -570}},
222 { DEF, -430, -600, -600, -600},
223 { DEF, -260, -240, -240, -240},
224 { DEF, -340, -690, -690, -690},
225 { DEF, -330, -330, -330, -330}},
228 { DEF, -720, -790, -960, -810},
229 { DEF, -480, -480, -360, -480},
230 { DEF, -660, -810, -920, -810},
231 { DEF, -550, -440, -550, -360}},
234 { DEF, -430, -600, -600, -600},
235 { DEF, -260, -240, -240, -240},
236 { DEF, -340, -690, -690, -690},
237 { DEF, -330, -330, -330, -330}},
240 { DEF, -400, -630, -890, -590},
241 { DEF, -430, -510, -200, -180},
242 { DEF, -380, -680, -890, -680},
243 { DEF, -280, -140, -280, -140}},
245 {DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF},
246 {DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF}}
250 PRIVATE
int dangle5_37_184[
NBPAIRS+1][5]=
253 {
INF, -50, -30, -20, -10},
254 {
INF, -20, -30, -0, -0},
255 {
INF, -30, -30, -40, -20},
256 {
INF, -30, -10, -20, -20},
257 {
INF, -30, -30, -40, -20},
258 {
INF, -30, -10, -20, -20},
263 PRIVATE
int dangle3_37_184[
NBPAIRS+1][5]=
266 {
INF, -110, -40, -130, -60},
267 {
INF, -170, -80, -170, -120},
268 {
INF, -70, -10, -70, -10},
269 {
INF, -80, -50, -80, -60},
270 {
INF, -70, -10, -70, -10},
271 {
INF, -80, -50, -80, -60},
276 PRIVATE
int dangle3_H_184[
NBPAIRS+1][5] =
279 { 0, -740, -280, -640, -360},
280 { 0, -900, -410, -860, -750},
281 { 0, -740, -240, -720, -490},
282 { 0, -490, -90, -550, -230},
283 { 0, -570, -70, -580, -220},
284 { 0, -490, -90, -550, -230},
288 PRIVATE
int dangle5_H_184[
NBPAIRS+1][5] =
291 { 0, -240, 330, 80, -140},
292 { 0, -160, 70, -460, -40},
293 { 0, 160, 220, 70, 310},
294 { 0, -150, 510, 10, 100},
295 { 0, 160, 220, 70, 310},
296 { 0, -50, 690, -60, -60},
304 PRIVATE
int ML_BASE37_184 = 0;
305 PRIVATE
int ML_closing37_184 = 340;
306 PRIVATE
int ML_intern37_184 = 40;
310 PRIVATE
int MAX_NINIO_184 = 300;
311 PRIVATE
int F_ninio37_184[5] = { 0, 40, 50, 20, 10 };
315 PRIVATE
char Tetraloops_184[1400] =
348 PRIVATE
int TETRA_ENERGY37_184[200] = {
349 -300, -300, -300, -300, -300, -300, -300, -300, -300, -250, -250, -250,
350 -250, -250, -200, -200, -200, -200, -200, -150, -150, -150, -150, -150,
351 -150, -150, -150, -150, -150, -150};
353 PRIVATE
int TETRA_ENTH37_184 = -400;
355 PRIVATE
char Triloops_184[241] =
"";
357 PRIVATE
int Triloop_E37_184[40];
361 PRIVATE
int TerminalAU_184 = 50;
364 PRIVATE
int DuplexInit_184 = 410;
#define K0
Definition: energy_const.h:14
#define INF
Definition: energy_const.h:16
#define NBPAIRS
Definition: energy_const.h:24