RNAlib-2.2.7
Data Structures
Here are the data structures with brief descriptions:
 C_struct_en
 CconstrainConstraints for cofolding
 CCOORDINATEThis is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE
 CduplexT
 CdupVar
 Cinteract
 CLIST
 CLST_BUCKET
 Cnode
 CPostorder_list
 Cpu_contribContributions to p_u
 Cpu_outCollection of all free_energy of beeing unpaired values for output
 CsnoopT
 CswString
 CTree
 CTwoDfold_varsVariables compound for 2Dfold MFE folding
 CTwoDpfold_varsVariables compound for 2Dfold partition function folding
 Cvrna_basepair_sBase pair data structure used in subopt.c
 Cvrna_bp_stack_sBase pair stack element
 Cvrna_cpair_sThis datastructure is used as input parameter in functions of PS_dot.c
 Cvrna_dimer_conc_s
 Cvrna_dimer_pf_s
 Cvrna_exp_param_sThe datastructure that contains temperature scaled Boltzmann weights of the energy parameters
 Cvrna_fc_sThe most basic data structure required by many functions throughout the RNAlib
 Cvrna_hc_sThe hard constraints data structure
 Cvrna_hc_up_sA single hard constraint for a single nucleotide
 Cvrna_hx_s
 Cvrna_md_sThe data structure that contains the complete model details used throughout the calculations
 Cvrna_mx_mfe_sMinimum Free Energy (MFE) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound_t
 Cvrna_mx_pf_sPartition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound_t
 Cvrna_param_sThe datastructure that contains temperature scaled energy parameters
 Cvrna_path_sAn element of a refolding path list
 Cvrna_pinfo_sA base pair info structure
 Cvrna_plist_sThis datastructure is used as input parameter in functions of PS_dot.h and others
 Cvrna_sc_sThe soft constraints data structure
 Cvrna_sect_sStack of partial structures for backtracking
 Cvrna_sol_TwoD_pf_tSolution element returned from vrna_pf_TwoD()
 Cvrna_sol_TwoD_tSolution element returned from vrna_mfe_TwoD()
 Cvrna_subopt_sol_sSolution element from subopt.c