RNAlib-2.2.7
centroid.h
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1 #ifndef VIENNA_RNA_PACKAGE_CENTROID_H
2 #define VIENNA_RNA_PACKAGE_CENTROID_H
3 
5 
6 #ifdef DEPRECATION_WARNINGS
7 # ifdef __GNUC__
8 # define DEPRECATED(func) func __attribute__ ((deprecated))
9 # else
10 # define DEPRECATED(func) func
11 # endif
12 #else
13 # define DEPRECATED(func) func
14 #endif
15 
16 /* make this interface backward compatible with RNAlib < 2.2.0 */
17 #define VRNA_BACKWARD_COMPAT
18 
38  double *dist);
39 
56 char *vrna_centroid_from_plist(int length,
57  double *dist,
58  vrna_plist_t *pl);
59 
76 char *vrna_centroid_from_probs(int length,
77  double *dist,
78  FLT_OR_DBL *probs);
79 
80 #ifdef VRNA_BACKWARD_COMPAT
81 
87 DEPRECATED(char *get_centroid_struct_pl(int length,
88  double *dist,
89  vrna_plist_t *pl));
90 
96 DEPRECATED(char *get_centroid_struct_pr(int length,
97  double *dist,
98  FLT_OR_DBL *pr));
99 
100 #endif
101 
102 #endif
char * vrna_centroid_from_plist(int length, double *dist, vrna_plist_t *pl)
Get the centroid structure of the ensemble.
char * vrna_centroid_from_probs(int length, double *dist, FLT_OR_DBL *probs)
Get the centroid structure of the ensemble.
char * vrna_centroid(vrna_fold_compound_t *vc, double *dist)
Get the centroid structure of the ensemble.
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: data_structures.h:39
The most basic data structure required by many functions throughout the RNAlib.
Definition: data_structures.h:390
char * get_centroid_struct_pr(int length, double *dist, FLT_OR_DBL *pr)
Get the centroid structure of the ensemble.
this datastructure is used as input parameter in functions of PS_dot.h and others ...
Definition: data_structures.h:164
FLT_OR_DBL * pr
A pointer to the base pair probability matrix.
char * get_centroid_struct_pl(int length, double *dist, vrna_plist_t *pl)
Get the centroid structure of the ensemble.