RNAlib-2.2.7
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Various utility- and helper-functions for sequence alignments and comparative structure prediction. More...
Go to the source code of this file.
Data Structures | |
struct | vrna_pinfo_s |
A base pair info structure. More... | |
Typedefs | |
typedef struct vrna_pinfo_s | vrna_pinfo_t |
Typename for the base pair info repesenting data structure vrna_pinfo_s. | |
typedef struct vrna_pinfo_s | pair_info |
Old typename of vrna_pinfo_s. More... | |
Functions | |
int | vrna_aln_mpi (char *Alseq[], int n_seq, int length, int *mini) |
Get the mean pairwise identity in steps from ?to?(ident) More... | |
vrna_pinfo_t * | vrna_aln_pinfo (vrna_fold_compound_t *vc, const char *structure, double threshold) |
Retrieve an array of vrna_pinfo_t structures from precomputed pair probabilities. More... | |
int | get_mpi (char *Alseq[], int n_seq, int length, int *mini) |
Get the mean pairwise identity in steps from ?to?(ident) More... | |
void | encode_ali_sequence (const char *sequence, short *S, short *s5, short *s3, char *ss, unsigned short *as, int circ) |
Get arrays with encoded sequence of the alignment. More... | |
void | alloc_sequence_arrays (const char **sequences, short ***S, short ***S5, short ***S3, unsigned short ***a2s, char ***Ss, int circ) |
Allocate memory for sequence array used to deal with aligned sequences. More... | |
void | free_sequence_arrays (unsigned int n_seq, short ***S, short ***S5, short ***S3, unsigned short ***a2s, char ***Ss) |
Free the memory of the sequence arrays used to deal with aligned sequences. More... | |
Various utility- and helper-functions for sequence alignments and comparative structure prediction.