RNAlib-2.2.7
Lfold.h
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1 #ifndef VIENNA_RNA_PACKAGE_LFOLD_H
2 #define VIENNA_RNA_PACKAGE_LFOLD_H
3 
7 /* make this interface backward compatible with RNAlib < 2.2.0 */
8 #define VRNA_BACKWARD_COMPAT
9 
10 #ifdef DEPRECATION_WARNINGS
11 # ifdef __GNUC__
12 # define DEPRECATED(func) func __attribute__ ((deprecated))
13 # else
14 # define DEPRECATED(func) func
15 # endif
16 #else
17 # define DEPRECATED(func) func
18 #endif
19 
32 #include <ViennaRNA/mfe.h>
33 
64 float
65 vrna_Lfold( const char *string,
66  int window_size,
67  FILE *file);
68 
69 #ifdef USE_SVM
70 
97 float
98 vrna_Lfoldz(const char *string,
99  int window_size,
100  double min_z,
101  FILE *file);
102 
103 #endif
104 
105 
123 float aliLfold( const char **strings,
124  char *structure,
125  int maxdist);
126 
127 #ifdef VRNA_BACKWARD_COMPAT
128 
139 DEPRECATED(float Lfold(const char *string, char *structure, int maxdist));
140 
148 DEPRECATED(float Lfoldz(const char *string, char *structure, int maxdist, int zsc, double min_z));
149 
150 #endif
151 
152 #endif
float aliLfold(const char **strings, char *structure, int maxdist)
float Lfoldz(const char *string, char *structure, int maxdist, int zsc, double min_z)
float vrna_Lfoldz(const char *string, int window_size, double min_z, FILE *file)
Local MFE prediction using a sliding window approach with z-score cut-off (simplified interface) ...
MFE calculations for single RNA sequences.
float vrna_Lfold(const char *string, int window_size, FILE *file)
Local MFE prediction using a sliding window approach (simplified interface)
float Lfold(const char *string, char *structure, int maxdist)
The local analog to fold().