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svm_utils.h
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#ifndef VIENNA_RNA_PACKAGE_SUBOPT_H
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#define VIENNA_RNA_PACKAGE_SUBOPT_H
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#include "svm.h"
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extern
char
*avg_model_string;
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extern
char
*sd_model_string;
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float
get_z(
char
*sequence,
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double
energy);
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double
avg_regression (
int
N,
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int
A,
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int
C,
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int
G,
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int
T,
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struct
svm_model *avg_model,
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int
*info );
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double
sd_regression (
int
N,
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int
A,
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int
C,
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int
G,
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int
T,
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struct
svm_model *sd_model);
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double
minimal_sd (
int
N,
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int
A,
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int
C,
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int
G,
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int
T);
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struct
svm_model *svm_load_model_string(
char
*modelString);
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int
*get_seq_composition(
short
*S,
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unsigned
int
start,
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unsigned
int
stop,
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unsigned
int
length);
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#endif
ViennaRNA
svm_utils.h
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