1 #ifndef VIENNA_RNA_PACKAGE_LPFOLD_H
2 #define VIENNA_RNA_PACKAGE_LPFOLD_H
7 #ifdef DEPRECATION_WARNINGS
9 # define DEPRECATED(func) func __attribute__ ((deprecated))
11 # define DEPRECATED(func) func
14 # define DEPRECATED(func) func
107 void putoutpU_prob_par(
double **pU,
135 void putoutpU_prob_bin_par(
double **pU,
void putoutpU_prob_bin(double **pU, int length, int ulength, FILE *fp, int energies)
Writes the unpaired probabilities (pU) or opening energies into a binary file.
plist * pfl_fold(char *sequence, int winSize, int pairSize, float cutoffb, double **pU, plist **dpp2, FILE *pUfp, FILE *spup)
Compute partition functions for locally stable secondary structures.
void init_pf_foldLP(int length)
The datastructure that contains temperature scaled Boltzmann weights of the energy parameters...
Definition: params.h:94
void update_pf_paramsLP(int length)
void putoutpU_prob(double **pU, int length, int ulength, FILE *fp, int energies)
Writes the unpaired probabilities (pU) or opening energies into a file.
this datastructure is used as input parameter in functions of PS_dot.h and others ...
Definition: data_structures.h:164
plist * pfl_fold_par(char *sequence, int winSize, int pairSize, float cutoffb, double **pU, plist **dpp2, FILE *pUfp, FILE *spup, vrna_exp_param_t *parameters)
Compute partition functions for locally stable secondary structures.