RNAlib-2.2.7
svm_utils.h
1 #ifndef VIENNA_RNA_PACKAGE_SUBOPT_H
2 #define VIENNA_RNA_PACKAGE_SUBOPT_H
3 
4 #include "svm.h"
5 
6 extern char *avg_model_string;
7 extern char *sd_model_string;
8 
9 float get_z(char *sequence,
10  double energy);
11 double avg_regression (int N,
12  int A,
13  int C,
14  int G,
15  int T,
16  struct svm_model *avg_model,
17  int *info );
18 double sd_regression (int N,
19  int A,
20  int C,
21  int G,
22  int T,
23  struct svm_model *sd_model);
24 double minimal_sd (int N,
25  int A,
26  int C,
27  int G,
28  int T);
29 struct svm_model *svm_load_model_string(char *modelString);
30 int *get_seq_composition( short *S,
31  unsigned int start,
32  unsigned int stop,
33  unsigned int length);
34 
35 #endif