RNAlib-2.2.7

Functions and data structures for constraining secondary structure predictions and evaluation. More...

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Macros

#define VRNA_CONSTRAINT_FILE   0
 Flag for vrna_constraints_add() to indicate that constraints are present in a text file. More...
 
#define VRNA_CONSTRAINT_SOFT_MFE   0
 Indicate generation of constraints for MFE folding. More...
 
#define VRNA_CONSTRAINT_SOFT_PF   VRNA_OPTION_PF
 Indicate generation of constraints for partition function computation. More...
 
#define VRNA_DECOMP_PAIR_HP   1
 Flag passed to generic softt constraints callback to indicate hairpin loop decomposition step. More...
 
#define VRNA_DECOMP_PAIR_IL   2
 Indicator for interior loop decomposition step. More...
 
#define VRNA_DECOMP_PAIR_ML   3
 Indicator for multibranch loop decomposition step. More...
 
#define VRNA_DECOMP_ML_ML_ML   5
 Indicator for decomposition of multibranch loop part. More...
 
#define VRNA_DECOMP_ML_STEM   4
 Indicator for decomposition of multibranch loop part. More...
 
#define VRNA_DECOMP_ML_ML   6
 Indicator for decomposition of multibranch loop part. More...
 
#define VRNA_DECOMP_ML_UP   11
 Indicator for decomposition of multibranch loop part. More...
 
#define VRNA_DECOMP_ML_ML_STEM   20
 Indicator for decomposition of multibranch loop part. More...
 
#define VRNA_DECOMP_ML_COAXIAL   13
 Indicator for decomposition of multibranch loop part. More...
 
#define VRNA_DECOMP_EXT_EXT   9
 Indicator for decomposition of exterior loop part. More...
 
#define VRNA_DECOMP_EXT_UP   8
 Indicator for decomposition of exterior loop part. More...
 
#define VRNA_DECOMP_EXT_STEM   14
 Indicator for decomposition of exterior loop part. More...
 
#define VRNA_DECOMP_EXT_EXT_EXT   15
 Indicator for decomposition of exterior loop part. More...
 
#define VRNA_DECOMP_EXT_STEM_EXT   16
 Indicator for decomposition of exterior loop part. More...
 
#define VRNA_DECOMP_EXT_STEM_OUTSIDE   17
 Indicator for decomposition of exterior loop part.
 
#define VRNA_DECOMP_EXT_EXT_STEM   18
 Indicator for decomposition of exterior loop part. More...
 
#define VRNA_DECOMP_EXT_EXT_STEM1   19
 Indicator for decomposition of exterior loop part. More...
 

Functions

void vrna_constraints_add (vrna_fold_compound_t *vc, const char *constraint, unsigned int options)
 Add constraints to a vrna_fold_compound_t data structure. More...
 

Detailed Description

Functions and data structures for constraining secondary structure predictions and evaluation.