2 #ifndef VIENNA_RNA_PACKAGE_SNOFOLD_H
3 #define VIENNA_RNA_PACKAGE_SNOFOLD_H
12 int snofold(
const char *sequence,
19 const int max_half_stem);
24 void snofree_arrays(
const int length);
25 void snoinitialize_fold(
int length);
26 void snoupdate_fold_params(
void);
27 int snoloop_energy(
short *ptable,
31 void snoexport_fold_arrays(
int **indx_p,
36 char * snobacktrack_fold_from_pair(
const char *sequence,
40 float alisnofold(
const char **strings,
46 const int max_half_stem);
47 void alisnofree_arrays(
const int length);
48 char *alisnobacktrack_fold_from_pair(
const char **sequence,
double cv_fact
This variable controls the weight of the covariance term in the energy function of alignment folding ...
Definition: data_structures.h:288
double nc_fact
This variable controls the magnitude of the penalty for non-compatible sequences in the covariance te...