RNAlib-2.2.7

Predicting local MFE structures of large sequences. More...

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Functions

float vrna_Lfold (const char *string, int window_size, FILE *file)
 Local MFE prediction using a sliding window approach (simplified interface) More...
 
float vrna_Lfoldz (const char *string, int window_size, double min_z, FILE *file)
 Local MFE prediction using a sliding window approach with z-score cut-off (simplified interface) More...
 
float aliLfold (const char **strings, char *structure, int maxdist)
 
float Lfold (const char *string, char *structure, int maxdist)
 The local analog to fold(). More...
 
float Lfoldz (const char *string, char *structure, int maxdist, int zsc, double min_z)
 

Detailed Description

Predicting local MFE structures of large sequences.