RNAlib-2.2.7
RNA Secondary Structure Prediction

This module contains all functions related to thermodynamic folding of RNAs. More...

+ Collaboration diagram for RNA Secondary Structure Prediction:

Modules

 Computing Minimum Free Energy (MFE) Structures
 This section covers all functions and variables related to the calculation of minimum free energy (MFE) structures.
 
 Computing Partition Functions and Pair Probabilities
 This section provides information about all functions and variables related to the calculation of the partition function and base pair probabilities.
 
 Enumerating Suboptimal Structures
 
 Calculate Secondary Structures of two RNAs upon Dimerization
 Predict structures formed by two molecules upon hybridization.
 
 Predicting Consensus Structures from Alignment(s)
 compute various properties (consensus MFE structures, partition function, Boltzmann distributed stochastic samples, ...) for RNA sequence alignments
 
 Predicting Locally stable structures of large sequences
 
 Classified Dynamic Programming
 

Files

file  mm.h
 Several Maximum Matching implementations.
 

Detailed Description

This module contains all functions related to thermodynamic folding of RNAs.