1 #ifndef VIENNA_RNA_PACKAGE_FOLD_VARS_H
2 #define VIENNA_RNA_PACKAGE_FOLD_VARS_H
17 #ifdef DEPRECATION_WARNINGS
19 # define DEPRECATED(func) func __attribute__ ((deprecated))
21 # define DEPRECATED(func) func
24 # define DEPRECATED(func) func
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: data_structures.h:39
int csv
generate comma seperated output
int cut_point
Marks the position (starting from 1) of the first nucleotide of the second molecule within the concat...
The model details data structure and its corresponding modifiers.
bondT * base_pair
Contains a list of base pairs after a call to fold().
int fold_constrained
Global switch to activate/deactivate folding with structure constraints.
Base pair stack element.
Definition: data_structures.h:192
FLT_OR_DBL * pr
A pointer to the base pair probability matrix.
int * iindx
index array to move through pr.