1 #ifndef VIENNA_RNA_PACKAGE_LFOLD_H
2 #define VIENNA_RNA_PACKAGE_LFOLD_H
8 #define VRNA_BACKWARD_COMPAT
10 #ifdef DEPRECATION_WARNINGS
12 # define DEPRECATED(func) func __attribute__ ((deprecated))
14 # define DEPRECATED(func) func
17 # define DEPRECATED(func) func
123 float aliLfold(
const char **strings,
127 #ifdef VRNA_BACKWARD_COMPAT
139 DEPRECATED(
float Lfold(
const char *
string,
char *structure,
int maxdist));
148 DEPRECATED(
float Lfoldz(
const char *
string,
char *structure,
int maxdist,
int zsc,
double min_z));
float aliLfold(const char **strings, char *structure, int maxdist)
float Lfoldz(const char *string, char *structure, int maxdist, int zsc, double min_z)
float vrna_Lfoldz(const char *string, int window_size, double min_z, FILE *file)
Local MFE prediction using a sliding window approach with z-score cut-off (simplified interface) ...
MFE calculations for single RNA sequences.
float vrna_Lfold(const char *string, int window_size, FILE *file)
Local MFE prediction using a sliding window approach (simplified interface)
float Lfold(const char *string, char *structure, int maxdist)
The local analog to fold().