1 #ifndef VIENNA_RNA_PACKAGE_PROFILEDIST_H
2 #define VIENNA_RNA_PACKAGE_PROFILEDIST_H
4 #ifdef DEPRECATION_WARNINGS
6 # define DEPRECATED(func) func __attribute__ ((deprecated))
8 # define DEPRECATED(func) func
11 # define DEPRECATED(func) func
float profile_edit_distance(const float *T1, const float *T2)
Align the 2 probability profiles T1, T2 .
void free_profile(float *T)
free space allocated in Make_bp_profile
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: data_structures.h:39
float * Make_bp_profile_bppm(FLT_OR_DBL *bppm, int length)
condense pair probability matrix into a vector containing probabilities for unpaired, upstream paired and downstream paired.
float * Make_bp_profile(int length)
void print_bppm(const float *T)
print string representation of probability profile