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| annotate_peaks | annotate_peaks |
| annotate_summits | annotate_summits |
| estimate_1n_coverage_1d_subsets | estimate_1n_coverage_1d_subsets |
| estimate_1n_coverage_highest_peak | estimate_1n_coverage_highest_peak |
| filter_peaks | filter_peaks |
| filter_peak_sizes | filter_peak_sizes |
| generate_summary | generate_summary |
| get_1d_peaks | get_1d_peaks |
| get_default_col_ramp | get_default_col_ramp |
| get_peak_sizes | get_peak_sizes |
| get_peak_summary | get_peak_summary |
| get_smudge_container | get_smudge_container |
| get_trinoploid_1n_est | get_trinoploid_1n_est |
| guess_genome_structure | guess_genome_structure |
| peak_agregation | peak_agregation |
| plot_expected_haplotype_structure | plot_expected_haplotype_structure |
| plot_histograms | plot_histograms |
| plot_legend | plot_legend |
| plot_seq_error_line | plot_seq_error_line |
| plot_smudgeplot | plot_smudgeplot |
| rounding | rounding |
| round_minor_variant_cov | round_minor_variant_cov |
| smudge_summary | smudge_summary |
| smudge_warn | smudge_warn |
| transform_minor_variant_cov | transform_minor_variant_cov |
| transform_pair_cov | transform_pair_cov |