VirFinder: identifying viral sequences from metagenomic data using sequence signatures

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Documentation for package ‘VirFinder’ version 1.1

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VirFinder-package An R package for predicting viral sequences in a fasta file.
VF.pred Identify viral sequences in a fasta file
VF.pred.user Identify viral sequences in a fasta file using user's trained prediction model
VF.qvalue Estimate the false discovery rates (q-values) using p-values
VF.train.user Train virus prediction model using user's database
VF.trainMod8mer The prediction models trained using sequences of various lengths from virus and host complete genomes.
VirFinder An R package for predicting viral sequences in a fasta file.