Interface to the Global 'Biodiversity' Information Facility API


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Documentation for package ‘rgbif’ version 1.1.0

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rgbif-package Interface to the Global Biodiversity Information Facility API.
as.download Import a downloaded file from GBIF.
as.download.character Import a downloaded file from GBIF.
as.download.download Import a downloaded file from GBIF.
check_wkt Check input WKT
count_facet Facetted count occurrence search.
datasets Search for datasets and dataset metadata.
dataset_metrics Get details on a GBIF dataset.
dataset_search Search datasets in GBIF.
dataset_suggest Suggest datasets in GBIF.
downloads Downloads interface
elevation Get elevation for lat/long points from a data.frame or list of points.
enumeration Enumerations.
enumeration_country Enumerations.
gbif_bbox2wkt Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box
gbif_citation Get citation for datasets used
gbif_issues Table of GBIF issues, with codes used in data output, full issue name, and descriptions.
gbif_names View highlighted terms in name results from GBIF.
gbif_oai GBIF registry data via OAI-PMH
gbif_oai_get_records GBIF registry data via OAI-PMH
gbif_oai_identify GBIF registry data via OAI-PMH
gbif_oai_list_identifiers GBIF registry data via OAI-PMH
gbif_oai_list_metadataformats GBIF registry data via OAI-PMH
gbif_oai_list_records GBIF registry data via OAI-PMH
gbif_oai_list_sets GBIF registry data via OAI-PMH
gbif_photos View photos from GBIF.
gbif_wkt2bbox Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box
installations Installations metadata.
isocodes Table of country two character ISO codes, and GBIF names
many-values Many value inputs to some parameters
map_fetch Fetch aggregated density maps of GBIF occurrences
name_backbone Lookup names in the GBIF backbone taxonomy.
name_issues Table of GBIF name usage issues, with codes used in data output, full issue name, and descriptions.
name_lookup Lookup names in all taxonomies in GBIF.
name_suggest A quick and simple autocomplete service that returns up to 20 name usages by doing prefix matching against the scientific name. Results are ordered by relevance.
name_usage Lookup details for specific names in all taxonomies in GBIF.
networks Networks metadata.
nodes Nodes metadata.
occ_count Get number of occurrence records.
occ_data Search for GBIF occurrences - simplified for speed
occ_download Spin up a download request for GBIF occurrence data.
occ_download_cancel Cancel a download creation process.
occ_download_cancel_staged Cancel a download creation process.
occ_download_datasets List datasets for a download
occ_download_dataset_activity Lists the downloads activity of a dataset
occ_download_get Get a download from GBIF.
occ_download_import Import a downloaded file from GBIF.
occ_download_list Lists the downloads created by a user.
occ_download_meta Retrieves the occurrence download metadata by its unique key.
occ_download_prep Spin up a download request for GBIF occurrence data.
occ_download_queue Download requests in a queue
occ_facet Facet GBIF occurrences
occ_fields Vector of fields in the output for the function 'occ_search()'
occ_get Get data for specific GBIF occurrences.
occ_issues Parse and examine further GBIF issues on a dataset
occ_issues_lookup Lookup occurrence issue definitions and short codes
occ_metadata Search for catalog numbers, collection codes, collector names, and institution codes.
occ_search Search for GBIF occurrences
occ_spellcheck Spell check search term for occurrence searches
organizations Organizations metadata.
parsenames Parse taxon names using the GBIF name parser.
rgbif Interface to the Global Biodiversity Information Facility API.
rgbif-defunct Defunct functions in rgbif
rgb_country_codes Look up 2 character ISO country codes
taxrank Get the possible values to be used for (taxonomic) rank arguments in GBIF API methods.
typestatus Type status options for GBIF searching
wkt_parse parse wkt into smaller bits