PheWAS-package |
PheWAS analysis methods |
addPhecodeInfo |
Add phecode descriptions and group information to existing data. |
addPhewasDescription |
Add phecode descriptions and group information to existing data. |
addPhewasGroups |
Add phecode descriptions and group information to existing data. |
createPhewasTable |
Creates a phenotype table from id, ICD-9 (or phecode, etc), count data. |
gender_restriction |
Data frame containing potential gender-restricted phewas codes. |
generateExample |
Generate example data for PheWAS |
mapICD9ToPhecodes |
Map ICD9 codes to phecodes |
mapICD9toPheWAS |
Map ICD9 codes to phecodes |
mapPhecodesToExclusions |
Map phecodes to their exclusions |
mapPheWAStoExclusions |
Map phecodes to their exclusions |
phecode_exclude |
Dataframe containing phewas code mappings to their exclusions |
pheinfo |
Data frame containing phecode information. |
phemap |
Dataframe containing phecode mappings. |
phenotypeManhattan |
Plotting methods for PheWAS results, phenotype association studies, or generic phenotype values |
phenotypePlot |
Plotting methods for PheWAS results, phenotype association studies, or generic phenotype values |
PheWAS |
PheWAS analysis methods |
phewas |
Function to perform a PheWAS analysis |
PheWAS-defunct |
Defunct methods in the PheWAS package |
phewasDT |
Wrapper to create a browsable datatable |
phewasManhattan |
Plotting methods for PheWAS results, phenotype association studies, or generic phenotype values |
phewasMeta |
Perform meta-analysis of PheWAS results |
phewasMetaModels |
Perform meta-analysis of PheWAS results |
phewas_ext |
Function to perform a PheWAS analysis with multiple methods |
PheWAS_Plotting |
Plotting methods for PheWAS results, phenotype association studies, or generic phenotype values |
plinkPhewasExport |
Export a table for PheWAS analysis in plink |
restrictPhecodesByGender |
Add PheWAS code descriptions to existing data. |