MESS-package |
Collection of miscellaneous useful and semi-useful functions |
adaptive.weights |
Compute weights for use with adaptive lasso. |
add_torows |
Fast addition of vector to each row of matrix |
age |
Compute the age of a person from two dates. |
auc |
Compute the area under the curve for two vectors. |
bdstat |
Danish live births and deaths |
bees |
Bee data. Number of different types of bees caught. |
bin |
Fast binning of numeric vector into equidistant bins |
categorize |
A table function to use with magrittr pipes |
clotting |
Blood clotting for 158 rats |
cmd |
Correlation matrix distance |
col.alpha |
Add and set alpha channel for RGB color |
col.shade |
Shade an RGB color |
col.tint |
Tint an RGB color |
common.shared |
Compute a common shared environment matrix |
common.shared.pedigree |
Compute a common shared environment matrix |
common.shared.pedigreeList |
Compute a common shared environment matrix |
conditional_rowMeans |
Parallel means conditional on number of non-missing |
cumsumbinning |
Binning based on cumulative sum with reset above threshold |
drop1.geeglm |
Drop All Possible Single Terms to a geeglm Model Using Wald or Score Test |
drop1.geem |
Drop All Possible Single Terms to a geem Model Using Wald or Score Test |
earthquakes |
Earthquakes in 2015 |
expand_table |
Expand table or matrix to data frame |
extended.shared |
Compute a common shared environment matrix |
extended.shared.pedigree |
Compute a common shared environment matrix |
extended.shared.pedigreeList |
Compute a common shared environment matrix |
fac2num |
Convert factor to numeric vector |
feature.test |
Inference for features identified by the Lasso |
filldown |
Fill down NA with the last observed observation |
geekin |
Fit a generalized estimating equation (GEE) model with fixed additive correlation structure |
gkgamma |
Goodman-Kruskal's gamma statistic for a two-dimensional table |
greenland |
Average yearly summer air temperature for Tasiilaq, Greenland |
happiness |
Happiness score and tax rates for 148 countries |
ht |
Show the head and tail of an object |
icecreamads |
Ice cream consumption and advertising |
ks_cumtest |
Kolmogorov-Smirnov goodness of fit test for cumulative discrete data |
kwdata |
Non-parametric Kruskal Wallis data example |
lifeexpect |
Estimated life expectancy for Danish newborns |
lower.tri.vector |
Split Matrix by Clusters and Return Lower Triangular Parts as Vector |
matched |
Flu hospitalization |
MESS |
Collection of miscellaneous useful and semi-useful functions |
mfastLmCpp |
Fast marginal simple regresion analyses |
monte_carlo_chisq_test |
Two-sided table test with fixed margins |
nh4 |
Ammonia nitrogen found in river |
ordered.clusters |
Check if unique elements of a vector appear in contiguous clusters |
pairwise.cor.test |
Pairwise Tests for Association/Correlation Between Paired Samples |
pairwise_combination_indices |
Compute all pairwise combinations of indices |
pairwise_Schur_product |
Compute Schur products (element-wise) of all pairwise combinations of columns in matrix |
panel.hist |
Panel plot of histogram and density curve |
panel.r2 |
Panel plot of R2 values for pairs |
picea |
Ozone concentration damage to picea spruce |
power_binom_test |
Power Calculations for Exact Test of a simple null hypothesis in a Bernoulli experiment |
power_mcnemar_test |
Power Calculations for Exact and Asymptotic McNemar Test in a 2 by 2 table |
power_prop_test |
Power Calculations for Two-Sample Test for Proportions with unequal sample size |
power_t_test |
Power calculations for one and two sample t tests with unequal sample size |
prepost.test |
Pretest-posttest RCT for quantitative observations with possible missing values |
print.geekin |
Fit a generalized estimating equation (GEE) model with fixed additive correlation structure |
qdiag |
Fast extraction of matrix diagonal |
QIC |
Quasi Information Criterion |
QIC.geeglm |
Quasi Information Criterion |
QIC.geekin |
Quasi Information Criterion |
QIC.ordgee |
Quasi Information Criterion |
qpcr |
Gene expression from real-time quantitative PCR |
quadform |
Fast quadratic form computation |
rainman |
Perception of points in a swarm |
repmat |
Fast replication of a matrix |
residualplot |
Plots a standardaized residual |
residualplot.default |
Plots a standardaized residual |
residualplot.glm |
Plots a standardaized residual |
residualplot.lm |
Plots a standardaized residual |
rmvt.pedigree |
Simulate residual multivariate t-distributed data from a polygenic model |
rmvtnorm.pedigree |
Simulate residual multivariate Gaussian data from a polygenic model |
rootogram |
Hanging rootogram for normal distribution |
rootonorm |
Hanging rootogram for normal distribution |
round_percent |
Round vector of number to percentages |
rud |
Simulate randomized urn design |
scorefct |
Internal functions for the MESS package |
screen_variables |
Screen variable before penalized regression |
segregate.genes |
Segregate genes through a pedigree |
sinv |
Invert a symmetric positive-definite matrix |
smokehealth |
Effect of smoking on self reported health |
soccer |
Danish national soccer players |
superroot2 |
Gene expression data from two-color dye-swap experiment |
tracemp |
Fast computation of trace of matrix product |
wallyplot |
Plots a Wally plot |
wallyplot.default |
Plots a Wally plot |
wallyplot.lm |
Plots a Wally plot |
write.xml |
Write a data frame in XML format |