Amplification+Sequencing Model Based on a Galton-Watson Branching Process and Poissonian Sampling

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Documentation for package ‘gwpcR’ version 1.0.3

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dgwpcr Binomial Galton-Watson Model for the Polymerase Chain Reaction (PCR)
dgwpcr.fun Binomial Galton-Watson Model for the Polymerase Chain Reaction (PCR)
dgwpcrpois Poissonian Sampling Distribution of the PCR Product Distribution
gwpcr Binomial Galton-Watson Model for the Polymerase Chain Reaction (PCR)
gwpcr.mixture Mixtures of Distributions with PCR-distributed Weights
gwpcr.molecules.precompute Precompute PCR Product Distribution for a larger Number of initial Molecules
gwpcr.sd PCR Product Distribution Standard Deviation
gwpcr.sd.inv PCR Product Distribution Standard Deviation
gwpcrpois Poissonian Sampling Distribution of the PCR Product Distribution
gwpcrpois.est Compatibility wrapper of 'gwpcrpois.est'
gwpcrpois.groupest Compatibility wrapper of 'gwpcrpois.groupest'
gwpcrpois.mle Compatibility wrapper of 'gwpcrpois.est'
gwpcrpois.mom Compatibility wrapper of 'gwpcrpois.est'
gwpcrpois.mom.groupwise Compatibility wrapper of 'gwpcrpois.groupest'
pgwpcr Binomial Galton-Watson Model for the Polymerase Chain Reaction (PCR)
pgwpcr.fun Binomial Galton-Watson Model for the Polymerase Chain Reaction (PCR)
pgwpcrpois Poissonian Sampling Distribution of the PCR Product Distribution
rgwpcr Binomial Galton-Watson Model for the Polymerase Chain Reaction (PCR)
rgwpcrpois Poissonian Sampling Distribution of the PCR Product Distribution
seqsim Simulate sequencing from a pool of DNA molecules with different abundances