A Package for Graphical Modelling in R


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Documentation for package ‘gRbase’ version 1.8-3.4

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A B C D E F G I J L M N O P Q R S T U V W misc

-- A --

adjList2adjMAT Graph, matrix and generating class coercions
adjList2M Graph, matrix and generating class coercions
ancestors Query a graph
ancestralGraph Query a graph
ancestralSet Query a graph
array-algebra Array algebra
array-create Create multidimensional arrays
array-dimnames Check compatibility of dimnames
array-distribution Marginalize and condition in multidimensional array.
array-normalize Normalize an array
array-operations Operations on multidimensional arrays.
array-properties Check if object is array
array-slice Array slices
ar_add Array algebra
ar_align Operations on multidimensional arrays.
ar_dist Marginalize and condition in multidimensional array.
ar_div Array algebra
ar_div0 Array algebra
ar_equal Operations on multidimensional arrays.
ar_expand Operations on multidimensional arrays.
ar_marg Operations on multidimensional arrays.
ar_mult Array algebra
ar_new Create multidimensional arrays
ar_normalize Normalize an array
ar_perm Operations on multidimensional arrays.
ar_prod Array algebra
ar_prod_list Operations on multidimensional arrays.
ar_slice Array slices
ar_slice_entries Array slices
ar_slice_mult Array slices
ar_slice_prim Array slices
ar_subt Array algebra
ar_sum Array algebra
ar_sum_list Operations on multidimensional arrays.
as.adjMAT Graph, matrix and generating class coercions
as.parray Representation of and operations on multidimensional arrays
ashtrees Crown dieback in ash trees

-- B --

BodyFat Body Fat Data
breastcancer Gene expression signatures for p53 mutation status in 250 breast cancer samples

-- C --

cad Coronary artery disease data
cad1 Coronary artery disease data
cad2 Coronary artery disease data
carcass Lean meat contents of 344 pig carcasses
carcassall Lean meat contents of 344 pig carcasses
chestSim Simulated data from the Chest Clinic example
chestSim1000 Simulated data from the Chest Clinic example
chestSim10000 Simulated data from the Chest Clinic example
chestSim100000 Simulated data from the Chest Clinic example
chestSim500 Simulated data from the Chest Clinic example
chestSim50000 Simulated data from the Chest Clinic example
children Query a graph
closure Query a graph
coerceGraph Graph coercion
coerceGraph.dgCMatrix Graph coercion
coerceGraph.graphNEL Graph coercion
coerceGraph.igraph Graph coercion
coerceGraph.matrix Graph coercion
colwiseProd Utility functions for gRbase
combnPrim Generate All Combinations of n Elements Taken m at a Time
compareModels Generic function for model comparison
compile Compile and propagate functions
conc2pcor Partial correlation (matrix)
cov2pcor Partial correlation (matrix)

-- D --

dag Create undirected and directed graphs
dagList Create undirected and directed graphs
dagList2dgCMatrix Create undirected and directed graphs
dagList2graphNEL Graph, matrix and generating class coercions
dagList2M Graph, matrix and generating class coercions
dagList2matrix Create undirected and directed graphs
dagList2tfM Graph, matrix and generating class coercions
data2parray Representation of and operations on multidimensional arrays
df2xtabs Create multidimensional arrays
dietox Growth curves of pigs in a 3x3 factorial experiment
dimnames_match Check compatibility of dimnames
dimnames_match_ Check compatibility of dimnames
dumping Gastric Dumping

-- E --

edgeList Find edges in a graph and edges not in a graph.
edgeList.default Find edges in a graph and edges not in a graph.
edgeListMAT Find edges in a graph and edges not in a graph.

-- F --

fit Compile and propagate functions

-- G --

getCliques Get cliques of an undirected graph
getCliques.default Get cliques of an undirected graph
getCliques.graphNEL Get cliques of an undirected graph
get_subset_ Utility functions for gRbase
get_superset_ Utility functions for gRbase
glist2adjMAT Graph, matrix and generating class coercions
graph-cliques Get cliques of an undirected graph
graph-coerce Graph coercion
graph-create Create undirected and directed graphs
graph-edgeList Find edges in a graph and edges not in a graph.
graph-gcproperties Properties of a generating class (for defining a graph)
graph-iplot Function for plotting graphs using the 'igraph' package.
graph-is Check properties of graphs.
graph-mcs Maximum cardinality search on undirected graph.
graph-minimaltriang Minimal triangulation of an undirected graph
graph-moralize Moralize a directed acyclic graph
graph-mpd Maximal prime subgraph decomposition
graph-query Query a graph
graph-randomdag Random directed acyclic graph
graph-rip Create RIP ordering of the cliques of an undirected graph; create junction tree.
graph-toposort Topological sort of vertices in directed acyclic graph
graph-triang Triangulation of an undirected graph
graph-triangulate Triangulation of an undirected graph
graph-vpar List of vertices and their parents for graph.
graph-xxx2yyy Graph, matrix and generating class coercions
graphNEL2adjMAT Graph, matrix and generating class coercions
graphNEL2dgCMatrix Graph, matrix and generating class coercions
graphNEL2ftM Graph, matrix and generating class coercions
graphNEL2igraph Graph, matrix and generating class coercions
graphNEL2M Graph, matrix and generating class coercions
graphNEL2MAT Graph, matrix and generating class coercions
graphNEL2matrix Graph, matrix and generating class coercions
graphNEL2tfM Graph, matrix and generating class coercions
gRbase The package 'gRbase': summary information
gRbase-generics Compile and propagate functions

-- I --

iplot Function for plotting graphs using the 'igraph' package.
iplot.graphNEL Function for plotting graphs using the 'igraph' package.
is.adjMAT Check properties of graphs.
is.complete Query a graph
is.DAG Check properties of graphs.
is.DAG.default Check properties of graphs.
is.DAG.graphNEL Check properties of graphs.
is.DAGMAT Check properties of graphs.
is.decomposition Query a graph
is.DG Check properties of graphs.
is.DG.default Check properties of graphs.
is.DG.graphNEL Check properties of graphs.
is.DGMAT Check properties of graphs.
is.insetlist Set operations
is.named.array Check if object is array
is.simplicial Query a graph
is.subsetof Set operations
is.TUG Check properties of graphs.
is.TUG.default Check properties of graphs.
is.TUG.graphNEL Check properties of graphs.
is.TUGMAT Check properties of graphs.
is.UG Check properties of graphs.
is.UG.default Check properties of graphs.
is.UG.graphNEL Check properties of graphs.
is.UGMAT Check properties of graphs.
isDecomposable Properties of a generating class (for defining a graph)
isDecomposable.default Properties of a generating class (for defining a graph)
isGraphical Properties of a generating class (for defining a graph)
isGraphical.default Properties of a generating class (for defining a graph)
isin Set operations
is_dimnames_ Check if object is array
is_named_array_ Check if object is array
is_number_vector_ Check if object is array
is_subsetof_ Utility functions for gRbase

-- J --

jTree Create RIP ordering of the cliques of an undirected graph; create junction tree.
jTree.default Create RIP ordering of the cliques of an undirected graph; create junction tree.
jTreeMAT Create RIP ordering of the cliques of an undirected graph; create junction tree.
junctionTree Create RIP ordering of the cliques of an undirected graph; create junction tree.
junctionTree.default Create RIP ordering of the cliques of an undirected graph; create junction tree.
junctionTreeMAT Create RIP ordering of the cliques of an undirected graph; create junction tree.

-- L --

lizard Lizard behaviour
lizardAGG Lizard behaviour
lizardRAW Lizard behaviour

-- M --

M2adjList Graph, matrix and generating class coercions
M2dagList Graph, matrix and generating class coercions
M2graphNEL Graph, matrix and generating class coercions
M2igraph Graph, matrix and generating class coercions
M2ugList Graph, matrix and generating class coercions
MAT2dgCMatrix Graph, matrix and generating class coercions
MAT2matrix Graph, matrix and generating class coercions
math Mathematics marks for students
mathmark Mathematics marks for students
maxCliqueMAT Get cliques of an undirected graph
maximalSets Set operations
mcs Maximum cardinality search on undirected graph.
mcs.default Maximum cardinality search on undirected graph.
mcsmarked Maximum cardinality search on undirected graph.
mcsmarked.default Maximum cardinality search on undirected graph.
mcsmarkedMAT Maximum cardinality search on undirected graph.
mcsMAT Maximum cardinality search on undirected graph.
mildew Mildew fungus
milkcomp Milk composition data
milkcomp1 Milk composition data
minimalSets Set operations
minimalTriang Minimal triangulation of an undirected graph
minimalTriang.default Minimal triangulation of an undirected graph
minimalTriangMAT Minimal triangulation of an undirected graph
moralize Moralize a directed acyclic graph
moralize.default Moralize a directed acyclic graph
moralizeMAT Moralize a directed acyclic graph
mpd Maximal prime subgraph decomposition
mpd.default Maximal prime subgraph decomposition
mpdMAT Maximal prime subgraph decomposition

-- N --

newar Create multidimensional arrays
nonEdgeList Find edges in a graph and edges not in a graph.
nonEdgeList.default Find edges in a graph and edges not in a graph.
nonEdgeListMAT Find edges in a graph and edges not in a graph.
Nutrimouse The Nutrimouse Dataset

-- O --

old-array-operations Array operations (2007)
old-parray Representation of and operations on multidimensional arrays

-- P --

parents Query a graph
parray Representation of and operations on multidimensional arrays
propagate Compile and propagate functions

-- Q --

querygraph Query a graph

-- R --

random_dag Random directed acyclic graph
rats Weightloss of rats
reinis Risk factors for coronary heart disease.
removeRedundant Set operations
rip Create RIP ordering of the cliques of an undirected graph; create junction tree.
rip.default Create RIP ordering of the cliques of an undirected graph; create junction tree.
ripMAT Create RIP ordering of the cliques of an undirected graph; create junction tree.

-- S --

simplicialNodes Query a graph
simulateArray Simulate data from array.
stepwise Compile and propagate functions
subsetof Set operations

-- T --

tab Create multidimensional arrays
tabAdd Array algebra
tabAdd__ Operations on multidimensional arrays.
tabAlign Operations on multidimensional arrays.
tabAlign__ Operations on multidimensional arrays.
tabCondProb Operations on multidimensional arrays.
tabDist Marginalize and condition in multidimensional array.
tabDiv Array algebra
tabDiv0 Array algebra
tabDiv0__ Operations on multidimensional arrays.
tabDiv__ Operations on multidimensional arrays.
tabEqual Operations on multidimensional arrays.
tabEqual__ Operations on multidimensional arrays.
tabExpand Operations on multidimensional arrays.
tabExpand__ Operations on multidimensional arrays.
tabExt Operations on multidimensional arrays.
tableDiv Array operations (2007)
tableGetSliceIndex Array operations (2007)
tableMargin Array operations (2007)
tableMult Array operations (2007)
tableOp Array operations (2007)
tableOp2 Array operations (2007)
tablePerm Array operations (2007)
tableSetSliceValue Array operations (2007)
tableSlice Array operations (2007)
tableSlicePrim Array operations (2007)
tabListAdd Operations on multidimensional arrays.
tabListAdd__ Operations on multidimensional arrays.
tabListMult Operations on multidimensional arrays.
tabListMult__ Operations on multidimensional arrays.
tabMarg Operations on multidimensional arrays.
tabMarg__ Operations on multidimensional arrays.
tabMult Array algebra
tabMult__ Operations on multidimensional arrays.
tabNormalize Normalize an array
tabOp__ Operations on multidimensional arrays.
tabPerm Operations on multidimensional arrays.
tabPerm__ Operations on multidimensional arrays.
tabProd Array algebra
tabSlice Operations on multidimensional arrays.
tabSlice2 Operations on multidimensional arrays.
tabSlice2Entries Operations on multidimensional arrays.
tabSlice2Entries_ Operations on multidimensional arrays.
tabSliceMult Operations on multidimensional arrays.
tabSlicePrim Operations on multidimensional arrays.
tabSubt Array algebra
tabSubt__ Operations on multidimensional arrays.
tabSum Array algebra
topoSort Topological sort of vertices in directed acyclic graph
topoSort.default Topological sort of vertices in directed acyclic graph
topoSortMAT Topological sort of vertices in directed acyclic graph
topoSort_vparList Topological sort of vertices in directed acyclic graph
triang Triangulation of an undirected graph
triang.default Triangulation of an undirected graph
triangulate Triangulation of an undirected graph
triangulate.default Triangulation of an undirected graph
triangulateMAT Triangulation of an undirected graph
triang_elo Triangulation of an undirected graph
triang_elo.default Triangulation of an undirected graph
triang_eloMAT Triangulation of an undirected graph
triang_eloMAT_ Triangulation of an undirected graph
triang_mcwh Triangulation of an undirected graph
triang_mcwh.default Triangulation of an undirected graph

-- U --

ug Create undirected and directed graphs
ug2dag Graph, matrix and generating class coercions
ugList Create undirected and directed graphs
ugList2dgCMatrix Create undirected and directed graphs
ugList2graphNEL Graph, matrix and generating class coercions
ugList2M Graph, matrix and generating class coercions
ugList2matrix Create undirected and directed graphs

-- V --

vchi List of vertices and their parents for graph.
vchi.graphNEL List of vertices and their parents for graph.
vchi.Matrix List of vertices and their parents for graph.
vchi.matrix List of vertices and their parents for graph.
vchiMAT List of vertices and their parents for graph.
vpaL2tfM Graph, matrix and generating class coercions
vpaList2adjMAT Graph, matrix and generating class coercions
vpar List of vertices and their parents for graph.
vpar.graphNEL List of vertices and their parents for graph.
vpar.Matrix List of vertices and their parents for graph.
vpar.matrix List of vertices and their parents for graph.
vparMAT List of vertices and their parents for graph.

-- W --

wine Chemical composition of wine

-- misc --

%a*% Array algebra
%a+% Array algebra
%a-% Array algebra
%a/% Array algebra
%a/0% Array algebra
%a==% Operations on multidimensional arrays.
%a^% Operations on multidimensional arrays.
%a_% Operations on multidimensional arrays.