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| facets-package | Cellular Fraction and Copy Numbers from Tumor Sequencing |
| emcncf | EM estimate of copy number and cellular fraction of segment clusters |
| emcncf2 | EM estimate of copy number and cellular fraction with clonal and subclonal cluster structure |
| facets | Cellular Fraction and Copy Numbers from Tumor Sequencing |
| facets-deprecated | Deprecated functions in package 'facets' |
| fitcncf | Copy number and cellular fraction of segment clusters |
| logRlogORspider | Plot segment logR-logOR summary statistics |
| plotSample | Plot the data and results for a single sample |
| preProcSample | Pre-process a sample |
| procSample | Process a sample |
| readSnpMatrix | Read in the SNP read count matrix file |