coloc-package |
Colocalisation tests of two genetic traits |
abf.plot |
Plotting functions for the coloc package |
approx.bf.estimates |
Internal function, approx.bf.estimates |
approx.bf.p |
Internal function, approx.bf.p |
bf |
Bayes factors to compare specific values of eta |
bf-method |
Bayes factors to compare specific values of eta |
ci |
Methods to extract information from a 'coloc' or 'colocBayes' object |
ci-method |
Methods to extract information from a 'coloc' or 'colocBayes' object |
coloc-class |
Classes '"coloc"' and '"colocBayes"' |
coloc.abf |
Fully Bayesian colocalisation analysis using Bayes Factors |
coloc.abf.datasets |
Bayesian colocalisation analysis using data.frames |
coloc.abf.snpStats |
Bayesian colocalisation analysis using snpStats objects |
coloc.bma |
Wrapper to use colocalization testing within a Bayesian model averaging structure. |
coloc.test |
Function to do colocalisation tests of two traits |
coloc.test.summary |
Colocalisation testing using regression coefficients |
colocABF-class |
Class '"colocABF"' holds objects returned by the 'coloc.abf' function |
colocBayes-class |
Classes '"coloc"' and '"colocBayes"' |
colocBayesBMA |
Classes '"coloc"' and '"colocBayes"' |
colocBMA |
Classes '"coloc"' and '"colocBayes"' |
colocPCs-class |
Class '"colocPCs"' |
combine.abf |
combine.abf |
eta |
Methods to extract information from a 'coloc' or 'colocBayes' object |
eta-method |
Methods to extract information from a 'coloc' or 'colocBayes' object |
fillin |
Impute missing genotypes |
finemap.abf |
Bayesian finemapping analysis |
logdiff |
logdiff |
logsum |
logsum |
pcs.model |
pcs.model |
pcs.prepare |
Functions to prepare principle component models for colocalisation testing |
plot |
Plotting functions for the coloc package |
plot-method |
Plotting functions for the coloc package |
process.dataset |
process.dataset |
sdY.est |
Estimate trait variance, internal function |
summary |
Methods to extract information from a 'coloc' or 'colocBayes' object |
summary-method |
Methods to extract information from a 'coloc' or 'colocBayes' object |
theta |
Methods to extract information from a 'coloc' or 'colocBayes' object |
theta-method |
Methods to extract information from a 'coloc' or 'colocBayes' object |
Var.data |
Var.data |
Var.data.cc |
Var.data |