Mon Nov 23 14:36:18 2009

CISs for scale 30000
	chromosome	peak_location	peak_height	start	end	width	n_insertions	p_value	scale	associated_ensembl_gene_id	other_ensembl_gene_id	associated_external_gene_id	other_external_gene_id	details
CIS18:34430572_30k	chr18	34430572	41	34337643	34508981	171339	63	0	30000	ENSMUSG00000005871	ENSMUSG00000073607\|ENSMUSG00000014504\|ENSMUSG00000005873\|ENSMUSG00000014503\|ENSMUSG00000036501\|ENSMUSG00000077263	Apc	AC114003.4-1\|Srp19\|Reep5\|Pkd2l2\|Fam13b\|SNORA17	details
CIS18:7899203_30k	chr18	7899203	11	7861450	7931147	69698	13	0	30000	ENSMUSG00000024283	ENSMUSG00000056177\|ENSMUSG00000064822	Wac	AC130718.3-1\|U6	details
CIS18:50077575_30k	chr18	50077575	6.8	50051438	50094999	43562	8	0	30000	ENSMUSG00000037416		Dmxl1		details
CIS18:64728489_30k	chr18	64728489	5.8	64713969	64737202	23234	7	4.2e-07	30000	ENSMUSG00000039529	ENSMUSG00000024587\|ENSMUSG00000024588	Atp8b1	Nars\|Fech	details
CIS18:35722873_30k	chr18	35722873	5.7	35714161	35734489	20329	6	4.3e-06	30000	ENSMUSG00000037236	ENSMUSG00000065649\|ENSMUSG00000073603\|ENSMUSG00000062742\|ENSMUSG00000037058\|ENSMUSG00000024354\|ENSMUSG00000024357\|ENSMUSG00000024353\|ENSMUSG00000073600\|ENSMUSG00000024352	Matr3	SNORA74\|AC121821.3-1\|AC121821.3-2\|Paip2\|Slc23a1\|Sil1\|2010001M09Rik\|Gm1614\|5133400G04Rik	details

CISs for scale 50000
	chromosome	peak_location	peak_height	start	end	width	n_insertions	scale	associated_ensembl_gene_id	other_ensembl_gene_id	associated_external_gene_id	other_external_gene_id	details
CIS18:34427530_50k	chr18	34427530	50	34282128	34543852	261725	64	50000	ENSMUSG00000005871	ENSMUSG00000073607\|ENSMUSG00000014504\|ENSMUSG00000005873\|ENSMUSG00000014503\|ENSMUSG00000077263\|ENSMUSG00000036501	Apc	AC114003.4-1\|Srp19\|Reep5\|Pkd2l2\|SNORA17\|Fam13b	details
CIS18:7901316_50k	chr18	7901316	12	7838309	7954631	116323	13	50000	ENSMUSG00000024283	ENSMUSG00000056177\|ENSMUSG00000064822	Wac	AC130718.3-1\|U6	details
CIS18:50077657_50k	chr18	50077657	7.5	50053423	50106737	53315	9	50000	ENSMUSG00000037416	ENSMUSG00000073567	Dmxl1	AC120859.12	details

CISs for scale 70000
	chromosome	peak_location	peak_height	start	end	width	n_insertions	p_value	scale	associated_ensembl_gene_id	other_ensembl_gene_id	associated_external_gene_id	other_external_gene_id	details
CIS18:34425497_70k	chr18	34425497	55	34242038	34581776	339739	65	0	70000	ENSMUSG00000005871	ENSMUSG00000073607\|ENSMUSG00000014504\|ENSMUSG00000005873\|ENSMUSG00000014503\|ENSMUSG00000077263\|ENSMUSG00000036501\|ENSMUSG00000084467\|ENSMUSG00000024376	Apc	AC114003.4-1\|Srp19\|Reep5\|Pkd2l2\|SNORA17\|Fam13b\|5S_rRNA\|Epb4.1l4a	details
CIS18:7898729_70k	chr18	7898729	12	7823986	7959881	135896	14	0	70000	ENSMUSG00000024283	ENSMUSG00000056177\|ENSMUSG00000064822	Wac	AC130718.3-1\|U6	details
CIS18:50080638_70k	chr18	50080638	7.9	50053459	50094228	40770	9	1.1e-05	70000	ENSMUSG00000037416		Dmxl1		details
CIS18:73841937_70k	chr18	73841937	7.6	73835142	73862321	27180	14	0.00018	70000	ENSMUSG00000024515	ENSMUSG00000036941\|ENSMUSG00000076941\|ENSMUSG00000064527\|ENSMUSG00000024556\|ENSMUSG00000037253	Smad4	Elac1\|AC134447.2-1\|Y_RNA\|Me2\|Mex3c	details

Data: colorectal
Chromosomes: chr18
Scales: 30000, 50000, 70000
System: SB
Specificity pattern: TA
Local hopping correction: none
Number of iterations: 100
Sample period: 0.1
Maximum sample points: 524288
Alpha: 0.05
Multiple testing: TRUE
Number of CISs: 12