chromosome peak_location peak_height start end width n_insertions p_value scale associated_ensembl_gene_id other_ensembl_gene_id associated_external_gene_id other_external_gene_id
CIS18:34427530_50k chr18 34427530 50 34282128 34543852 261725 64 0 50000 ENSMUSG00000005871 ENSMUSG00000073607|ENSMUSG00000014504|ENSMUSG00000005873|ENSMUSG00000014503|ENSMUSG00000077263|ENSMUSG00000036501 Apc AC114003.4-1|Srp19|Reep5|Pkd2l2|SNORA17|Fam13b

View in Ensembl Genome Browser


Blue line: kernel smoothed estimate
Green line: 'specificity pattern'-density
Red line: significance threshold
Dotted red line: significance threshold after multiple testing correction
Red circle: peaks location
Colored vertical lines: insertion locations color-coded by tumor or sample


Insertions located in the CIS:
sampleID tissueType tissueID chr location associatedGene cohort contig_depth
S10709 Cec A chr18 34238164 2 1.00
S550 Col A chr18 34271958 1 1.00
S633 Duo B chr18 34302449 Apc 1 1.00
S633 Duo B chr18 34302451 Apc 1 1.00
S10339 Duo B chr18 34312096 Apc 2 1.00
S633 Duo B chr18 34380059 Apc 1 1.00
S633 Col A chr18 34383059 Apc 1 1.00
S360 Col A chr18 34387190 Apc 1 1.00
S10744 Ile B chr18 34388891 Apc 2 1.00
S10756 Int D chr18 34389907 Apc 2 1.00
S633 Duo B chr18 34390400 Apc 1 1.00
S10397 Duo A chr18 34390863 Apc 2 1.00
S358 Duo C chr18 34391222 Apc 1 1.00
S550 Col A chr18 34391226 Apc 1 1.00
S299 Duo B chr18 34394829 Apc 1 1.00
S10339 Duo C chr18 34395221 Apc 2 1.00
S299 Duo A chr18 34396727 Apc 1 1.00
S10339 Duo C chr18 34398932 Apc 2 1.00
S10689 Jej A chr18 34405057 Apc 2 1.00
S10339 Duo C chr18 34405063 Apc 2 1.00
S11417 Jej B chr18 34406273 Apc 2 1.00
S11417 Jej B chr18 34406886 Apc 2 1.00
S10719 Ile D chr18 34409548 Apc 2 1.00
S10719 Ile D chr18 34409932 Apc 2 1.00
S10756 Int D chr18 34416208 Apc 2 1.00
S10098 Jej A chr18 34417325 Apc 2 1.00
S10384 Jej A chr18 34425028 Apc 2 1.00
S9900 Jej A chr18 34426717 Apc 2 1.00
S633 Duo B chr18 34426928 Apc 1 1.00
S299 Duo C chr18 34427669 Apc 1 1.00
S10074 Duo A chr18 34427796 Apc 2 1.00
S10074 Ile B chr18 34427796 Apc 2 1.00
S10744 Ile B chr18 34427961 Apc 2 1.00
S470 Col A chr18 34429980 Apc 1 1.00
S9859 Jej C chr18 34430425 Apc 2 1.00
S299 Duo C chr18 34430762 Apc 1 1.00
S10744 Ile B chr18 34432625 Apc 2 1.00
S10744 Ile B chr18 34433280 Apc 2 1.00
S9830 Col A chr18 34433716 Apc 2 1.00
S292 Jej A chr18 34433812 Apc 1 1.00
S10640 Ile A chr18 34438438 Apc 2 1.00
S10719 Duo A chr18 34439174 Apc 2 1.00
S10631 Int B chr18 34440646 Apc 2 1.00
S633 Duo B chr18 34442742 Apc 1 1.00
S10640 Ile A chr18 34446344 Apc 2 1.00
S358 Duo D chr18 34446887 Apc 1 1.00
S358 Duo D chr18 34448995 Apc 1 1.00
S10631 Int G chr18 34453504 Apc 2 1.00
S10631 Int E chr18 34454308 Apc 2 1.00
S633 Duo B chr18 34458666 Apc 1 1.00
S10397 Duo A chr18 34458876 Apc 2 1.00
S10719 Ile A chr18 34459191 Apc 2 1.00
S10719 Ile B chr18 34459191 Apc 2 1.00
S550 Col A chr18 34459747 Apc 1 1.00
S10719 Ile A chr18 34460001 Apc 2 1.00
S10719 Ile C chr18 34460225 Apc 2 1.00
S10712 Ile A chr18 34465705 Apc 2 1.00
S10719 Ile C chr18 34466295 Apc 2 1.00
S10719 Duo A chr18 34466418 Apc 2 1.00
S10709 Cec A chr18 34466683 Apc 2 1.00
S10709 Cec A chr18 34471151 Apc 2 1.00
S10339 Duo B chr18 34472006 Apc 2 1.00
S10884 Duo C chr18 34494568 Apc 2 1.00
S10719 Duo A chr18 34571672 2 1.00