chromosome peak_location peak_height start end width n_insertions p_value scale associated_ensembl_gene_id other_ensembl_gene_id associated_external_gene_id other_external_gene_id
CIS18:73841937_70k chr18 73841937 7.6 73835142 73862321 27180 14 0.00018 70000 ENSMUSG00000024515 ENSMUSG00000036941|ENSMUSG00000076941|ENSMUSG00000064527|ENSMUSG00000024556|ENSMUSG00000037253 Smad4 Elac1|AC134447.2-1|Y_RNA|Me2|Mex3c

View in Ensembl Genome Browser


Blue line: kernel smoothed estimate
Green line: 'specificity pattern'-density
Red line: significance threshold
Dotted red line: significance threshold after multiple testing correction
Red circle: peaks location
Colored vertical lines: insertion locations color-coded by tumor or sample


Insertions located in the CIS:
sampleID tissueType tissueID chr location associatedGene cohort contig_depth
S10756 Int A chr18 73691269 2 1.00
S9859 Jej A chr18 73717147 2 1.00
S550 Col A chr18 73745650 1 1.00
S10382 Jej A chr18 73750475 2 1.00
S550 Duo L chr18 73820770 Smad4 1 1.00
S550 Duo J chr18 73830717 Smad4 1 1.00
S550 Ile A chr18 73831955 Smad4 1 1.00
S360 Jej A chr18 73855181 Smad4 1 1.00
S550 Duo J chr18 73860099 Smad4 1 1.00
S10384 Jej A chr18 73894860 2 1.00
S10640 Cec A chr18 73929345 2 1.00
S9859 Jej C chr18 73946223 2 1.00
S10744 Jej A chr18 74025254 2 1.00
S10741 Jej A chr18 74072087 2 1.00