{% extends "layout.html" %} {% block head %} {% endblock %} {% block content %}
{% if report_data['report_display_name'] != '' %}
{{report_data['report_display_name']}}
{% endif %}
CRISPResso2 run information
{% for (data_label,data_path) in report_data['fig_datas']['plot_1a'] %}

Data: {{data_label}}

{% endfor %}

CRISPResso version: {{report_data['run_data']['running_info']['version']}}

Run completed: {{report_data['run_data']['running_info']['end_time_string']}}

Amplicon sequence:

{{report_data['run_data']['running_info']['args']['amplicon_seq']}}

{% if report_data['run_data']['running_info']['args']['guide_seq'] != '' %}

Guide sequence:

{{report_data['run_data']['running_info']['args']['guide_seq']}}

{% endif %}

Command used:

{{report_data['run_data']['running_info']['command_used']}}

Parameters:

{{report_data['run_data']['running_info']['args_string']}}

Running log

Allele assignments
{% for (data_label,data_path) in report_data['fig_datas']['plot_1b'] %}

Data: {{data_label}}

{% endfor %}
{% for (data_label,data_path) in report_data['fig_datas']['plot_1c'] %}

Data: {{data_label}}

{% endfor %}
{% if report_data['fig_locs']['plot_1d'] %}
{% for (data_label,data_path) in report_data['fig_datas']['plot_1d'] %}

Data: {{data_label}}

{% endfor %}
{% endif %}
{# end card #} {# start global coding sequence report #} {% if report_data['fig_locs']['plot_5a'] %}
Global frameshift analysis
{% for (data_label,data_path) in report_data['fig_datas']['plot_5a'] %}

Data: {{data_label}}

{% endfor %}
{% endif %} {% if report_data['fig_locs']['plot_6a'] %}
Global frameshift mutagenesis profiles
{% for (data_label,data_path) in report_data['fig_datas']['plot_6a'] %}

Data: {{data_label}}

{% endfor %}
{% endif %} {% if report_data['fig_locs']['plot_8a'] %}
Global splicing analysis
{% for (data_label,data_path) in report_data['fig_datas']['plot_8a'] %}

Data: {{data_label}}

{% endfor %}
{% endif %} {# end of global coding sequence analysis #} {# start hdr summary #} {% if report_data['fig_locs'][report_data.amplicons[0]]['plot_4g'] %}
{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
HDR summary plot
{% else %}
HDR summary report (all reads aligned to {{report_data.amplicons[0]}})
{% endif %}
{% for (data_label,data_path) in report_data['fig_datas'][report_data.amplicons[0]]['plot_4g'] %}

Data: {{data_label}}

{% endfor %}
{% endif %} {# end HDR summary #} {# start prime editing report #} {% if report_data['fig_locs'][report_data.amplicons[0]]['plot_11a'] %}
{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
Prime editing report
{% else %}
Prime editing report (all reads aligned to {{report_data.amplicons[0]}})
{% endif %}
{% for (data_label,data_path) in report_data['fig_datas'][report_data.amplicons[0]]['plot_11a'] %}

Data: {{data_label}}

{% endfor %}
{% endif %} {% if report_data['sgRNA_based_fig_names'][report_data.amplicons[0]] and report_data['sgRNA_based_fig_names'][report_data.amplicons[0]]['11b']%}
{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
Prime editing summary plots at analysis positions
{% else %}
Prime editing summary plots at analysis positions (aligned to {{report_data.amplicons[0]}})
{% endif %}
{% for fig_name in report_data['sgRNA_based_fig_names'][report_data.amplicons[0]]['11b'] %}
{% for (data_label,data_path) in report_data['fig_datas'][report_data.amplicons[0]][fig_name] %}

Data: {{data_label}}

{% endfor %}
{% endfor %}
{% endif %} {# end plot 11b for prime editing #} {% if report_data['fig_locs']['plot_11c'] %}
Scaffold insertions
{% for (data_label,data_path) in report_data['fig_datas']['plot_11c'] %}

Data: {{data_label}}

{% endfor %}
{% endif %} {# end prime editing section #} {% if report_data.amplicons|length == 1 %}
{# if only one amplicon, just a normal div #} {% else %} {# If there is more than one amplicon, print a navigation to show each amplicon #}

Reads are aligned to each amplicon sequence separately. Quantification and visualization of these reads are shown for each amplicon below:

Amplicons
{% endif %} {# end if report contains more than one amplicon #} {% if report_data.amplicons|length == 1 %} {# if only one amplicon, just a normal div #}
{% else %} {# jumbotron_content #}
{# jumbrotron #}
{# column #}
{% endblock %} {% block foot %} {% endblock %}