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VEP run statistics

VEP version (API) 86 (86)
Cache/Database /home/kruealbr/.vep/homo_sapiens/86_GRCh37
Species homo_sapiens
Command line options
--cache --offline --everything --fork 2 --assembly GRCh37 --plugin CADD -i ADH1B.vcf.gz --vcf -o chr4.phase3_integrated.vcf --force_overwrite
Start time 2016-11-08 12:38:48
End time 2016-11-08 12:38:51
Run time 3 seconds
Input file (format) ADH1B.vcf.gz (VCF)
Output file chr4.phase3_integrated.vcf [text]

General statistics

Lines of input read 644
Variants processed 389
Variants remaining after filtering 389
Lines of output written 389
Novel / existing variants 2 (0.5%) / 387 (99.5%)
Overlapped genes 2
Overlapped transcripts 7
Overlapped regulatory features 3

Variant classes

 
 

Consequences (most severe)

 
 

Consequences (all)

 
 

Coding consequences

 
 

SIFT summary

 
 

PolyPhen summary

 
 

Variants by chromosome

 
 

Distribution of variants on chromosome 4

 

Position in protein