Topology-based pathway analysis of RNA-seq data


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Documentation for package ‘ToPASeq’ version 1.24.0

Help Pages

CePa Centrlity-based Pathway entrichment (CePa)
clipper clipper
convertIdentifiersByVector Convert pathway identifiers
DEGraph Differential Expression of Graph (DEGraph)
degtable Functions to extract and display results
degtable.topResult Functions to extract and display results
prs Pathway regulation score (PRS)
prsWeights Pathway regulation score (PRS)
PRS_wrapper Pathway Regulation Score (PRS)
PWEA PathWay Enrichment Analysis (PWEA)
res Functions to extract and display results
res.topResult Functions to extract and display results
SPIA Signaling Pathway Impact Analysis (SPIA)
TAPPA Topological Analysis of Pathway Phenotype Association (TAPPA)
topo.sig Functions to extract and display results
topo.sig.topResult Functions to extract and display results
TopologyGSA Gene set analysis exploiting the topology of a pathway (TopologyGSA)