S4 Classes for Single Cell Data

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Documentation for package ‘SingleCellExperiment’ version 1.0.0

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cbind-method Combining methods
coerce-method SingleCellExperiment class
colData-method SingleCellExperiment class
counts Named assay fields
counts-method Named assay fields
counts<- Named assay fields
counts<--method Named assay fields
cpm Named assay fields
cpm-method Named assay fields
cpm<- Named assay fields
cpm<--method Named assay fields
isSpike Spike-in methods
isSpike-method Spike-in methods
isSpike<- Spike-in methods
isSpike<--method Spike-in methods
logcounts Named assay fields
logcounts-method Named assay fields
logcounts<- Named assay fields
logcounts<--method Named assay fields
normcounts Named assay fields
normcounts-method Named assay fields
normcounts<- Named assay fields
normcounts<--method Named assay fields
objectVersion Miscellaneous methods
objectVersion-method Miscellaneous methods
rbind-method Combining methods
reducedDim Reduced dimensions methods
reducedDim-method Reduced dimensions methods
reducedDim<- Reduced dimensions methods
reducedDim<--method Reduced dimensions methods
reducedDimNames Reduced dimensions methods
reducedDimNames-method Reduced dimensions methods
reducedDims Reduced dimensions methods
reducedDims-method Reduced dimensions methods
reducedDims<- Reduced dimensions methods
reducedDims<--method Reduced dimensions methods
rowData-method SingleCellExperiment class
show-method Miscellaneous methods
SingleCellExperiment SingleCellExperiment class
SingleCellExperiment-class SingleCellExperiment class
sizeFactors Size factors methods
sizeFactors-method Size factors methods
sizeFactors<--method Size factors methods
spikeNames Spike-in methods
spikeNames-method Spike-in methods
subset-method Subsetting methods
tpm Named assay fields
tpm-method Named assay fields
tpm<- Named assay fields
tpm<--method Named assay fields
[-method Subsetting methods
[<--method Subsetting methods