![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
| BinGraph | Compute a distance bin matrix from a distance matrix |
| Compactness | Measure the strength of association using compactness scores |
| CreateGrid | Generate a grid-like network |
| DistGraph | Compute the vertex pair distance matrix for a graph |
| edgelist.humannet | Pre-processed dataset for the SANTA vignette |
| edgelist.intact | Pre-processed dataset for the SANTA vignette |
| g.bandyopadhyay.treated | Pre-processed dataset for the SANTA vignette |
| g.bandyopadhyay.untreated | Pre-processed dataset for the SANTA vignette |
| g.costanzo.cor | Pre-processed dataset for the SANTA vignette |
| g.costanzo.raw | Pre-processed dataset for the SANTA vignette |
| g.srivas.high | Pre-processed dataset for the SANTA vignette |
| g.srivas.untreated | Pre-processed dataset for the SANTA vignette |
| go.entrez | Pre-processed dataset for the SANTA vignette |
| GraphDiffusion | Compute diffusion kernel-based distance matrix |
| GraphMFPT | Compute mean first-passage time-based distance matrix |
| Knet | Measure the strength of association between a phenotype and a network by computing the strength of hit clustering on the network |
| Knode | Rank vertices by their strength of association with high-weight vertices |
| plot.Knet | Plot the results of the 'Knet' function |
| rnai.cheung | Pre-processed dataset for the SANTA vignette |
| SpreadHits | Spread hits across a network in clusters |