Access HDF5 content from h5serv


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Documentation for package ‘rhdf5client’ version 1.20.0

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as coercion for remote array to remote matrix
check_hsds a test request
dataset Find a dataset on source from its name
dim Obtain dimensions of an object of type HSDSArraySeed
dim-method HDF Server content is assumed transposed relative to R matrix layout
dim-method Obtain dimensions of an object of type HSDSArraySeed
dimnames Obtain names of dimensions for an object of type HSDSArraySeed
dimnames-method dimnames not stored with H5S_source as of Jan 2018
dimnames-method Obtain names of dimensions for an object of type HSDSArraySeed
domains HSDS server domains accessor
domains-method HSDS server domains accessor
dsmeta list information about datasets available in an H5S_source
extract_array Access dataset backed by an HSDSArraySeed
extract_array-method Access dataset backed by an HSDSArraySeed
fetchDatasets fetch datasets of a hdf5 file from the hsds server
getData extract elements of a one or two-dimensional HSDSDataset
getData-method extract elements of a one or two-dimensional HSDSDataset
getDatasetAttrs getDatasetAttrs from hsds server
getDatasetSlice getDatasetSlice from hsds server
getDatasetUUIDs getDatasetUUIDs from hsds server
getDims getDims from hsds server
getHRDF getHRDF from hsds server
getReq list information about server content available in an H5S_source hsds instance
groups HDF5 server data groups accessor
groups-method HDF5 server data groups accessor
H5S_Array create H5S_Array instance given url (filepath) and entity (host) name
H5S_Array-class extension of DelayedArray for HDF Server content
H5S_ArraySeed-class H5S_Array for HDF Server content
H5S_dataset construct H5S_dataset object
H5S_dataset-class construct H5S_dataset object
H5S_dataset2 H5S_dataset2 for datasets in hsds server
H5S_Matrix-class extension of DelayedMatrix for HDF Server content
H5S_source H5S_source identifies an HDF5/HSDS server and manages some metadata about contents
H5S_source-class H5S_source identifies an HDF5/HSDS server and manages some metadata about contents
HSDSArray A DelayedArray backend for accessing a remote HDF5 server.
HSDSArray-class A DelayedArray backend for accessing a remote HDF5 server.
HSDSArraySeed HSDSArraySeed for HSDSArray backend to DelayedArray
HSDSArraySeed-class HSDSArraySeed for HSDSArray backend to DelayedArray
HSDSDataset Construct an object of type HSDSDataset A HSDSDataset is a representation of a dataset in a HDF5 file.
HSDSDataset-class An S4 class to represent a dataset in a HDF5 file.
HSDSFile Construct an object of type HSDSFile
HSDSFile-class An S4 class to represent an HDF5 file accessible from a server.
hsdsInfo HSDS server get request accessor
hsdsInfo-method HSDS server get request accessor
HSDSMatrix DelayedMatrix subclass for a two-dimensional HSDSArray
HSDSMatrix-class DelayedMatrix subclass for a two-dimensional HSDSArray
HSDSSource Construct an object of type HSDSSource.
HSDSSource-class An S4 class to represent a HDF5 server listening on a port.
HSDS_Matrix simplify construction of DelayedMatrix from url and path in HSDS
HSDS_Matrix_OLD simplify construction of DelayedMatrix from url and path in HSDS
internalDim acquire internal HDF5 dimension information for matrix
isplit This function is deprecated and will be defunct in the next release.
links access for link metadata for HDF5 server groups
links-method access for link metadata for HDF5 server groups
listDatasets Search inner file hierarchy for datasets
listDomains List files and subdirectories of a domain
listDomains-method List files and subdirectories of a domain
rhdf5client rhdf5client: A package for accessing HDFGroup HDF5 servers from R.
rhdf5client-deprecated Deprecated functions in package 'rhdf5client'
setPath set path for hsds server resource
setPath-method set path for hsds server resource
sproc This function is deprecated and will be defunct in the next release.
targets provide the full URLs for link members
transfermode<- replace transfer mode
transfermode<--method replace transfer mode
URL_h5serv manage h5serv URL
URL_hsds manage hsds URL
[-method extract elements from H5S_dataset
[-method extract elements from H5S_dataset
[-method bracket method for 1d request from HSDSDataset
[-method bracket method for 2d request from HSDSDataset
[[ Subscript operator
[[-method Subscript operator