Representation of Sparse Experiments and Assays Across Samples

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Documentation for package ‘RaggedExperiment’ version 1.4.0

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RaggedExperiment-package RaggedExperiment: Range-based data representation package
assay-functions Create simplified representation of ragged assay data.
assay-method RaggedExperiment objects
assayNames-method RaggedExperiment objects
assays-method RaggedExperiment objects
coerce-method RaggedExperiment objects
colData-method RaggedExperiment objects
colData<--method RaggedExperiment objects
compactAssay Create simplified representation of ragged assay data.
compactSummarizedExperiment Create SummarizedExperiment representations by transforming ragged assays to rectangular form.
dim-method RaggedExperiment objects
dimnames-method RaggedExperiment objects
dimnames<--method RaggedExperiment objects
disjoinAssay Create simplified representation of ragged assay data.
disjoinSummarizedExperiment Create SummarizedExperiment representations by transforming ragged assays to rectangular form.
length-method RaggedExperiment objects
mcols-method RaggedExperiment objects
mcols<--method RaggedExperiment objects
overlapsAny-method RaggedExperiment objects
qreduceAssay Create simplified representation of ragged assay data.
qreduceSummarizedExperiment Create SummarizedExperiment representations by transforming ragged assays to rectangular form.
RaggedExperiment RaggedExperiment objects
RaggedExperiment-class RaggedExperiment objects
rowData-method RaggedExperiment objects
rowData<--method RaggedExperiment objects
rowRanges-method RaggedExperiment objects
show-method RaggedExperiment objects
sparseAssay Create simplified representation of ragged assay data.
sparseSummarizedExperiment Create SummarizedExperiment representations by transforming ragged assays to rectangular form.
subsetByOverlaps-method RaggedExperiment objects
[-method RaggedExperiment objects