Package: qsea
Type: Package
Title: IP-seq data analysis and vizualization
Version: 1.24.0
Date: 2021-08-26
Author: Matthias Lienhard, Lukas Chavez, Ralf Herwig
Maintainer: Matthias Lienhard <lienhard@molgen.mpg.de>
Description: qsea (quantitative sequencing enrichment analysis) was developed 
    as the successor of the MEDIPS package for analyzing data derived from 
    methylated DNA immunoprecipitation (MeDIP) experiments followed by 
    sequencing (MeDIP-seq). However, qsea provides several functionalities for 
    the analysis of other kinds of quantitative sequencing data 
    (e.g. ChIP-seq, MBD-seq, CMS-seq and others) 
    including calculation of differential enrichment between groups of samples.
License: GPL (>=2)
biocViews: Sequencing, DNAMethylation, CpGIsland, ChIPSeq,
        Preprocessing, Normalization, QualityControl, Visualization,
        CopyNumberVariation, ChipOnChip, DifferentialMethylation
Depends: R (>= 3.5)
Imports: Biostrings, graphics, gtools, methods, stats, utils, HMMcopy,
        rtracklayer, BSgenome, GenomicRanges, Rsamtools, IRanges,
        limma, GenomeInfoDb, BiocGenerics, grDevices, zoo, BiocParallel
VignetteBuilder: knitr
Suggests: BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, testthat, BiocStyle,
        knitr, rmarkdown, BiocManager, MASS
ByteCompile: no
Packaged: 2022-11-01 22:37:57 UTC; biocbuild
NeedsCompilation: yes
git_url: https://git.bioconductor.org/packages/qsea
git_branch: RELEASE_3_16
git_last_commit: 662ea99
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
Built: R 4.2.3; x86_64-apple-darwin13.4.0; 2023-06-03 20:17:43 UTC; unix
