Outlier profile and pathway analysis in R


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Documentation for package ‘oppar’ version 1.26.0

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oppar-package oppar: A package for outlier profile and pathway analysis.
$-method A S4 class for the output of OPPAR main function, opa.
bcm Breast cancer metastases from different anatomical sites
eset Tomlins et al. Prostate Cancer data (GEO: GSE6099)
getSampleOutlier Retrieving outlier genes in samples
getSampleOutlier-method Retrieving outlier genes in samples
getSubtypeProbes Retrieving outlier genes from a group of related samples
getSubtypeProbes-method Retrieving outlier genes from a group of related samples
gsva gsva
gsva-method gsva
maupin Maupin's TGFb data and a TGFb gene signature
opa Outlier profile Analysis
opa-method Outlier profile Analysis
oppar oppar: A package for outlier profile and pathway analysis.
OPPARList-class A S4 class for the output of OPPAR main function, opa.
show-method A S4 class for the output of OPPAR main function, opa.