ncGTW-package | ncGTW: A package for detecting and aligning the misaligned features in LC-MS data |
adjustRT | Adjust retention time |
alignData | ncGTWoutput-accessors |
alignData-method | ncGTWoutput-accessors |
compCV | Compare CV |
downSample | ncGTWinput-accessors |
downSample-method | ncGTWinput-accessors |
fillPeaksChromPar | Edited XCMS fillPeaksChromPar for feature-wise warping functions |
getPeaksncGTW | Edited XCMS getPeaks for feature-wise warping functions |
groupInfo | ncGTWinput-accessors |
groupInfo-method | ncGTWinput-accessors |
loadProfile | Load sample profiles for each peak group |
meanCorOl | Compute average pairwise correlation and overlapping area |
misalignDetect | Detect misaligned peak groups in xcmsSet object of XCMS |
ncGTW | ncGTW: A package for detecting and aligning the misaligned features in LC-MS data |
ncGTWalign | Run ncGTW alignment |
ncGTWinput | Class "ncGTWinput" |
ncGTWinput-class | Class "ncGTWinput" |
ncGTWoutput | Class "ncGTWoutput" |
ncGTWoutput-class | Class "ncGTWoutput" |
ncGTWparam | Class "ncGTWparam" |
ncGTWparam-class | Class "ncGTWparam" |
ncGTWpath | ncGTWinput-accessors |
ncGTWpath-method | ncGTWinput-accessors |
ncGTWpeaks | ncGTWwarp-accessors |
ncGTWpeaks-method | ncGTWwarp-accessors |
ncGTWwarp | Class "ncGTWwarp" |
ncGTWwarp-class | Class "ncGTWwarp" |
plotGroup | Plot profiles for each peak group |
profiles | ncGTWinput-accessors |
profiles-method | ncGTWinput-accessors |
rtncGTW | ncGTWwarp-accessors |
rtncGTW-method | ncGTWwarp-accessors |
rtRaw | ncGTWinput-accessors |
rtRaw-method | ncGTWinput-accessors |
scanRange | ncGTWinput-accessors |
scanRange-method | ncGTWinput-accessors |
xcmsExamples | Examples of xcmsSet for inputs of ncGTW |