parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)


[Up] [Top]

Documentation for package ‘mzR’ version 2.28.0

Help Pages

analyzer Access the metadata from an 'mzR' object.
analyzer-method Class 'mzR' and sub-classes
chromatogram Access the raw data from an 'mzR' object.
chromatogram-method Access the raw data from an 'mzR' object.
chromatogramHeader Access the raw data from an 'mzR' object.
chromatogramHeader-method Access the raw data from an 'mzR' object.
chromatograms Access the raw data from an 'mzR' object.
chromatograms-method Access the raw data from an 'mzR' object.
chromatogramsInfo Access the metadata from an 'mzR' object.
chromatogramsInfo-method Class 'mzR' and sub-classes
class:mzR Class 'mzR' and sub-classes
class:mzRident Class 'mzR' and sub-classes
class:mzRnetCDF Class 'mzR' and sub-classes
class:mzRpwiz Class 'mzR' and sub-classes
class:mzRramp Class 'mzR' and sub-classes
close Class 'mzR' and sub-classes
close-method Class 'mzR' and sub-classes
copyWriteMSData Write MS spectrum data to a MS file copying metadata from the originating file
database Access the metadata from an 'mzR' object.
database-method Class 'mzR' and sub-classes
detector Access the metadata from an 'mzR' object.
detector-method Class 'mzR' and sub-classes
enzymes Access the metadata from an 'mzR' object.
enzymes-method Class 'mzR' and sub-classes
fileName Create and check mzR objects from netCDF, mzXML, mzData or mzML files.
fileName-method Class 'mzR' and sub-classes
get3Dmap Access the raw data from an 'mzR' object.
get3Dmap-method Access the raw data from an 'mzR' object.
header Access the raw data from an 'mzR' object.
header-method Access the raw data from an 'mzR' object.
initializeRamp Create and check mzR objects from netCDF, mzXML, mzData or mzML files.
initializeRamp-method Class 'mzR' and sub-classes
instrumentInfo Access the metadata from an 'mzR' object.
instrumentInfo-method Class 'mzR' and sub-classes
ionisation Access the metadata from an 'mzR' object.
ionisation-method Class 'mzR' and sub-classes
isInitialized Create and check mzR objects from netCDF, mzXML, mzData or mzML files.
isInitialized-method Class 'mzR' and sub-classes
isolationWindow Returns the ion selection isolation window
isolationWindow-method Returns the ion selection isolation window
isolationWindow-methods Returns the ion selection isolation window
length Class 'mzR' and sub-classes
length-method Class 'mzR' and sub-classes
manufacturer Access the metadata from an 'mzR' object.
manufacturer-method Class 'mzR' and sub-classes
model Access the metadata from an 'mzR' object.
model-method Class 'mzR' and sub-classes
modifications Access the metadata from an 'mzR' object.
modifications-method Class 'mzR' and sub-classes
mzidInfo Access the metadata from an 'mzR' object.
mzidInfo-method Class 'mzR' and sub-classes
mzR-class Class 'mzR' and sub-classes
mzRident-class Class 'mzR' and sub-classes
mzRnetCDF-class Class 'mzR' and sub-classes
mzRpwiz-class Class 'mzR' and sub-classes
mzRramp-class Class 'mzR' and sub-classes
nChrom Access the raw data from an 'mzR' object.
openIDfile Create and check mzR objects from netCDF, mzXML, mzData or mzML files.
openMSfile Create and check mzR objects from netCDF, mzXML, mzData or mzML files.
para Access the metadata from an 'mzR' object.
para-method Class 'mzR' and sub-classes
peaks Access the raw data from an 'mzR' object.
peaks-method Access the raw data from an 'mzR' object.
peaksCount Access the raw data from an 'mzR' object.
peaksCount-method Access the raw data from an 'mzR' object.
psms Access the metadata from an 'mzR' object.
psms-method Class 'mzR' and sub-classes
pwiz.version Get the version number of pwiz backend.
runInfo Access the metadata from an 'mzR' object.
runInfo-method Class 'mzR' and sub-classes
sampleInfo Access the metadata from an 'mzR' object.
sampleInfo-method Class 'mzR' and sub-classes
score Access the metadata from an 'mzR' object.
score-method Class 'mzR' and sub-classes
softwareInfo Access the metadata from an 'mzR' object.
softwareInfo-method Class 'mzR' and sub-classes
sourceInfo Access the metadata from an 'mzR' object.
sourceInfo-method Class 'mzR' and sub-classes
specParams Access the metadata from an 'mzR' object.
specParams-method Class 'mzR' and sub-classes
spectra Access the raw data from an 'mzR' object.
spectra-method Access the raw data from an 'mzR' object.
substitutions Access the metadata from an 'mzR' object.
substitutions-method Class 'mzR' and sub-classes
tic Access the raw data from an 'mzR' object.
tic-method Access the raw data from an 'mzR' object.
tolerance Access the metadata from an 'mzR' object.
tolerance-method Class 'mzR' and sub-classes
writeMSData Write MS spectrum data to an MS file
writeMSData-method Write MS spectrum data to an MS file