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| MultiDataSet-package | MultiDataSet: Implementation of the BRGE's basic classes |
| add_eset | Method to add an 'eSet' to 'MultiDataSet'. |
| add_eset-method | MultiDataSet instances |
| add_genexp | Method to add an expression microarray dataset to 'MultiDataSet'. |
| add_genexp-method | MultiDataSet instances |
| add_methy | Method to add a slot of methylation to 'MultiDataSet'. |
| add_methy-method | MultiDataSet instances |
| add_rnaseq | Method to add an expression RNA seq dataset to 'MultiDataSet'. |
| add_rnaseq-method | MultiDataSet instances |
| add_rse | Method to add a 'RangedSummarizedExperiment' to 'MultiDataSet'. |
| add_rse-method | MultiDataSet instances |
| add_se | Method to add a 'SummarizedExperiment' to 'MultiDataSet'. |
| add_se-method | MultiDataSet instances |
| add_snps | Method to add a slot of SNPs to 'MultiDataSet'. |
| add_snps-method | MultiDataSet instances |
| add_table | Method to add a 'matrix' to 'MultiDataSet'. |
| add_table-method | MultiDataSet instances |
| as.list | MultiDataSet instances |
| as.list-method | MultiDataSet instances |
| assayData | MultiDataSet instances |
| assayData-method | MultiDataSet instances |
| betas | MethylationSet instances |
| betas-method | MethylationSet instances |
| checkProbes | Filter 'MethylationSet' probes |
| checkProbes-method | MethylationSet instances |
| checkSamples | Modify a 'MethylationSet' to only contain common samples |
| checkSamples-method | MethylationSet instances |
| chrNumToChar | Convert chr numbers to chr strings |
| commonIds | Get the name of the ids common to all datasets |
| commonIds-method | MultiDataSet instances |
| commonSamples | Method to select samples that are present in all datasets. |
| commonSamples-method | MultiDataSet instances |
| createMultiDataSet | MultiDataSet instances |
| dims | MultiDataSet instances |
| dims-method | MultiDataSet instances |
| fData | MultiDataSet instances |
| fData-method | MultiDataSet instances |
| featureData | MultiDataSet instances |
| featureData-method | MultiDataSet instances |
| getMs | Transforms beta values to M-values |
| getMs-method | MethylationSet instances |
| length | MultiDataSet instances |
| length-method | MultiDataSet instances |
| mae2mds | Convert a 'MultiAssayExperiment' to a 'MultiDataSet' |
| mds2mae | Convert a 'MultiDataSet' to a 'MultiAssayExperiment' |
| MethylationSet | MethylationSet instances |
| methylationSet | MethylationSet instances |
| MethylationSet-class | MethylationSet instances |
| MethylationSet-methods | MethylationSet instances |
| MultiDataSet | MultiDataSet: Implementation of the BRGE's basic classes |
| MultiDataSet-class | MultiDataSet instances |
| MultiDataSet-methods | MultiDataSet instances |
| MultiDataSet-methods, | MultiDataSet instances |
| names | MultiDataSet instances |
| names-method | MultiDataSet instances |
| ncols | MultiDataSet instances |
| ncols-method | MultiDataSet instances |
| nrows | MultiDataSet instances |
| nrows-method | MultiDataSet instances |
| pData | MultiDataSet instances |
| pData-method | MultiDataSet instances |
| phenoData | MultiDataSet instances |
| phenoData-method | MultiDataSet instances |
| rowRanges | MultiDataSet instances |
| rowRanges-method | MultiDataSet instances |
| rowRangesElements | Get the name of the datasets that have rowRanges |
| rowRangesElements-method | MultiDataSet instances |
| sampleNames-method | MultiDataSet instances |
| subset-method | MultiDataSet instances |
| w_iclusterplus | Apply iClusterPlus clustering method to a MultiDataSet object |
| w_iclusterplus-method | MultiDataSet instances |
| w_mcia | Apply mcia integration method to a MultiDataSet object |
| w_mcia-method | MultiDataSet instances |
| [ | MultiDataSet instances |
| [-method | MultiDataSet instances |
| [[-method | MultiDataSet instances |