Mixture Models for Single-Cell Assays


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Documentation for package ‘MIMOSA’ version 1.28.1

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MIMOSA-package MIMOSA: Mixture Models for Single Cell Assays
.fitMCMC Fit the MIMOSA model via MCMC
asinh_trans asinh_trans
BetaMixResult-class The output of fitting Beta-Binomial EM implementation 'BetaMix'.
boxplotMIMOSAResultList boxplotMIMOSAResultList
combine.MIMOSA Combine MIMOSAResultList objects
ConstructMIMOSAExpressionSet A wrapper for constructing an Expression Set for MIMOSA
countsTable Extract the table of counts from a MIMOSA model
countsTable-method Extract the table of counts from a MIMOSA model
countsTable.MIMOSAResultList Extract the table of counts from a MIMOSA model
fdr Compute the fdr (q-value) from posterior probabilities
fdr.matrix Compute the fdr (q-value) from posterior probabilities
fdr.MIMOSAResult Compute the fdr (q-value) from posterior probabilities
fdr.MIMOSAResultList Compute the fdr (q-value) from posterior probabilities
getPosteriorResponseRate Compute the posterior response rate from MCMC samples
getW Extract the posterior probabilities of response from a MIMOSA model
getW.MIMOSAResult Extract the posterior probabilities of response from a MIMOSA model
getW.MIMOSAResultList Extract the posterior probabilities of response from a MIMOSA model
getZ Extract the posterior probabilities of response from a MIMOSA model
getZ.MIMOSAResult Extract the posterior probabilities of response from a MIMOSA model
getZ.MIMOSAResultList Extract the posterior probabilities of response from a MIMOSA model
ICS Stimulated and unstimulated T-cell counts for an ICS assay
MDMix EM fitting of the Multinomial Dirichlet MIMOSA model.
MIMOSA Fit a MIMOSA Model
MIMOSA-method Fit a MIMOSA Model
MIMOSAExpressionSet Construct an ExpressionSet for MIMOSA
MIMOSAResult Stores the result of a MIMOSA fitted model
MIMOSAResult-class Stores the result of a MIMOSA fitted model
pData,BetaMixResult pData
pData-method pData
pData.MIMOSAResultList pData
pData<--method pData
print.MIMOSAResultList Print a MIMOSAResultList
show show
show-method show
volcanoPlot Volcano plot for a MIMOSA model