Methylclock - DNA methylation-based clocks


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Documentation for package ‘methylclock’ version 1.0.0

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checkClocks Check wheter input data contains the required CpGs for the implemented clocks.
checkClocksGA Check wheter input data contains the required CpGs for the implemented clocks for Gestational Age.
commonClockCpgs Get common CpGs
DNAmAge DNAm age estimation using different DNA methylation clocks.
DNAmGA Gestational DNAm age estimation using different DNA methylation clocks.
getCellTypeReference Get cell type reference
load_DNAmGA_Clocks_data Loads DNAmGA clock data from methylclockData
load_DNAm_Clocks_data Loads DNAm clock data from methylclockData
meffilEstimateCellCountsFromBetas Estimate cell counts for a beta matrix from a reference
meffilListCellTypeReferences List of available cell type references
methylclock methylclock
plotCorClocks Plot correlation among DNAm clockx
plotDNAmAge Plot DNAm age estimation vs chronological age.
progress_data PROGRESS cohor data
progress_vars PROGRESS cohort variables