GWAS Incorporating Networks


[Up] [Top]

Documentation for package ‘martini’ version 1.22.0

Help Pages

get_GI_network Get gene-interaction network.
get_GM_network Get gene membership network.
get_GS_network Get genomic sequence network
gwas2bed Converts a MAP data.frame to a BED data.frame
ldweight_edges Include linkage disequilibrium information in the network.
maxflow Maxflow algorithm
mincut_c Min-cut algorithm
minigwas Description of the minigwas dataset.
minippi PPIs for the minigwas dataset.
minisnpMapping Genes for the minigwas dataset.
plot_ideogram Ideogram of SConES results.
scones Find connected explanatory SNPs
scones.cv Find connected explanatory SNPs.
scones.cv_ Find connected explanatory features
scones_ Find connected explanatory features
search_cones Find connected explanatory SNPs.
sigmod Find connected explanatory SNPs
sigmod.cv Find connected explanatory SNPs.
sigmod.cv_ Find connected explanatory features
sigmod_ Find connected explanatory features
simulate_causal_snps Simulate causal SNPs
simulate_phenotype Simulate phenotype
subvert Vertices with an attribute
wrap_Xy Make pseudo SnpMatrix object