Inversions in genotype data


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Documentation for package ‘inveRsion’ version 1.38.0

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inveRsion-package Detection of Genetic inversions using SNP-array data
ac Sample data set of class accuracy
accBic accBic computes "accuracy" from "inversionList"
accBic-method accBic computes "accuracy" from "inversionList"
accBic-methods accBic computes "accuracy" from "inversionList"
accuracy-class Class "accuracy"
codeHaplo Codes haplotypes into decimal integers
gDat Sample data of class genoDat
GenoDat-class Class "GenoDat"
GenoDatROI-class Class "GenoDatROI"
getClassif Overall classification
getClassif-method Overall classification
getClassif-methods Overall classification
getInv gets "scan" into a matrix
getInv-method gets "scan" into a matrix
getInv-methods gets "scan" into a matrix
getROIs Extracts regions of possible inversion events from "scan"
getROIs-method Extracts regions of possible inversion events from "scan"
getROIs-methods Extracts regions of possible inversion events from "scan"
hapCode Sample data set of class HaploCode
HaploCode-class Class "HaploCode"
initialize-method Class "GenoDatROI"
initialize-method Class "HaploCode"
inveRsion Detection of Genetic inversions using SNP-array data
inversion-class Class "inversion"
inversionList-class Class "inversionList"
invList Sample data of class inversionList
listInv Constructor of class inversionList
listInv-method Constructor of class inversionList
listInv-methods Constructor of class inversionList
plot-method Class "GenoDat"
plot-method Class "accuracy"
plot-method Class "inversionList"
plot-method Class "scan"
ROIGenoDat Class "GenoDatROI"
scan-class Class "scan"
scanInv Inversion scan
scanRes Sample data set of class scan
setUpGenoDatFile Loads genotype data onto R
setUpGenoDatSNPmat Loads genotype data onto R
show-method Class "GenoDat"
show-method Class "GenoDatROI"
show-method Class "HaploCode"
show-method Class "inversionList"
show-method Class "scan"