Plots data (continuous/discrete) along chromosomal ideogram


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Documentation for package ‘IdeoViz’ version 1.16.0

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IdeoViz-package Plots continuous or discrete data along chromosomal ideogram
avgByBin Aggregates data by genomic bins
binned_fullGenome Data for example 3.
binned_multiSeries Data for vignette example 1.
binned_singleSeries Data for example 2.
getBins getBins
getIdeo Download ideogram table from UCSC
GSM733664_broadPeaks Data for vignette example 4.
hg18_ideo Ideogram table for hg18
plotChromValuePair Base function which plots the ideogram and superimposed data for a single chromosome. plotOnIdeo() calls this function and stacks the resulting output.
plotOnIdeo Plot data superimposed on chromosomal ideogram
wins Data for vignette example 1.
wins_discrete Data for example 2.
wins_entiregenome Data for example 3.