iBMQ-package |
iBMQ : An Integrated Hierarchical Bayesian Model for Multivariate eQTL Mapping |
calculateThreshold |
Calculate PPA significance threshold leading to a desired false discovery rate |
eqtlClassifier |
Classifying the eQTLs |
eqtlFinder |
eqtlFinder |
eqtlMcmc |
Bayesian Multiple eQTL mapping using MCMC |
gene |
Gene expression from whole eye tissue from n = 68 BXD RIS mice. |
genepos |
Gene position data frame |
genotype.liver |
A set of 290 SNPs from 60 F2 mice. |
hotspotFinder |
hotspotFinder |
iBMQ |
iBMQ : An Integrated Hierarchical Bayesian Model for Multivariate eQTL Mapping |
map.liver |
SNP position data frame |
phenotype.liver |
Gene expression from liver tissue from n = 60 F2 mice. |
PPA.liver |
A matrix with Posterior Probabilities of Association |
probe.liver |
Gene position data frame |
snp |
A set of 1700 SNP from 68 BXD RIS mice. |
snppos |
SNP position data frame |