Bayesian Hidden Markov Model for the detection of differentially methylated regions


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Documentation for package ‘hummingbird’ version 1.0.1

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hummingbird-package A Bayesian Hidden Markov Model for the detection of differentially methylated regions
abnormM Sample matrix
abnormUM Sample matrix
exampleHummingbird Sample dataset
exampleSECase Sample input data
exampleSEControl Sample input data
hummingbird A Bayesian Hidden Markov Model for the detection of differentially methylated regions
hummingbirdEM EM Algorithm for Fitting the Hidden Markov Model
hummingbirdEMinternal EM Algorithm (internal)
hummingbirdGraph Observations and Predictions Graphs
hummingbirdPostAdjustment Post Adjustment algorithm for the output of the EM
hummingbirdPostAdjustmentInternal Post Adjustment algorithm (internal)
normM Sample matrix
normUM Sample matrix
pos Sample matrix