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| ggtree-package | visualizing phylogenetic tree and heterogenous associated data based on grammar of graphics 'ggtree' provides functions for visualizing phylogenetic tree and its associated data in R. |
| %+>% | %+>% |
| %<% | %<% |
| %<+% | %<+% |
| %>% | pipe |
| . | . |
| add_colorbar | add_colorbar |
| annotation_image | annotation_image |
| applyLayoutDaylight | applyLayoutDaylight |
| as.polytomy | as.polytomy |
| collapse.ggtree | collapse-ggtree |
| Date2decimal | Date2decimal |
| decimal2Date | decimal2Date |
| expand | expand |
| facet_plot | facet_plot |
| flip | flip |
| GeomHilight | StatBalance |
| geom_aline | geom_aline |
| geom_balance | geom_balance |
| geom_cladelabel | geom_cladelabel |
| geom_cladelabel2 | geom_cladelabel2 |
| geom_hilight | geom_hilight |
| geom_hilight_encircle | geom_hilight_encircle |
| geom_label2 | geom_label2 |
| geom_motif | geom_motif |
| geom_nodelab | geom_nodelab |
| geom_nodepoint | geom_nodepoint |
| geom_point2 | geom_point2 |
| geom_range | geom_range |
| geom_rootpoint | geom_rootpoint |
| geom_segment2 | geom_segment2 |
| geom_strip | geom_strip |
| geom_taxalink | geom_taxalink |
| geom_text2 | geom_text2 |
| geom_tiplab | geom_tiplab |
| geom_tiplab2 | geom_tiplab2 |
| geom_tippoint | geom_tippoint |
| geom_tree | geom_tree |
| geom_tree2 | geom_tree2 |
| geom_treescale | geom_treescale |
| get.offspring.tip | get.offspring.tip |
| get.path | get.path |
| getChild.df | getChild.df |
| getNodeAngle.df | getNodeAngle.df |
| getNodesBreadthFirst.df | getNodesBreadthFirst.df |
| getParent.df | getParent.df |
| getSubtree | getSubtree |
| getSubtree.df | getSubtree.df |
| getSubtreeUnrooted | getSubtreeUnrooted |
| getSubtreeUnrooted.df | getSubtreeUnrooted |
| getTreeArcAngles | getTreeArcAngles |
| get_balance_position | get_balance_position |
| get_clade_position | get_clade_position |
| get_heatmap_column_position | get_heatmap_column_position |
| get_taxa_name | get_taxa_name |
| ggtree | visualizing phylogenetic tree and heterogenous associated data based on grammar of graphics 'ggtree' provides functions for visualizing phylogenetic tree and its associated data in R. |
| gheatmap | gheatmap |
| gzoom | gzoom method |
| gzoom-method | gzoom method |
| gzoom.phylo | gzoom |
| identify.gg | identify |
| inset | inset |
| layoutDaylight | Equal daylight layout method for unrooted trees. |
| layoutEqualAngle | layoutEqualAngle |
| MRCA | MRCA |
| msaplot | msaplot |
| multiplot | multiplot |
| nodebar | nodebar |
| nodeid | nodeid |
| nodepie | nodepie |
| open_tree | open_tree |
| package-ggtree | visualizing phylogenetic tree and heterogenous associated data based on grammar of graphics 'ggtree' provides functions for visualizing phylogenetic tree and its associated data in R. |
| phylopic | phylopic |
| range_format | range_format |
| reroot | reroot method |
| reroot-method | reroot method |
| rescale_tree | rescale_tree |
| revts | revts |
| rotate | rotate |
| rotateTreePoints.df | rotateTreePoints.data.fram |
| rotate_tree | rotate_tree |
| scaleClade | scaleClade |
| scale_color | scale_color method |
| scale_color-method | scale_color method |
| scale_x_ggtree | scale_x_ggtree |
| set_hilight_legend | set_hilight_legend |
| StatBalance | StatBalance |
| StatHilight | StatBalance |
| stat_balance | stat_balance |
| stat_hilight | stat_hilight |
| subview | subview |
| theme_inset | theme_inset |
| theme_tree | theme_tree |
| theme_tree2 | theme_tree2 |
| viewClade | viewClade |
| xlim_expand | xlim_expand |
| xlim_tree | xlim_tree |