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| combine_spectra | Combine mass spectra of each scan and each file into a single master spectrum |
| cosmiq | cosmiq - main wrapper function |
| create_datamatrix | Quantifying mz/RT intensities using peak locations from master map |
| eicmatrix | Generate matrix of combined extraced ion chromatograms (EICs) |
| peakdetection | An algorithm for the detection of peak locations and boundaries in mass spectra or ion chromatograms |
| quantify_combined | Generate report with combined ion intensities |
| retention_time | Detection of chromatographic peak locations from extracted ion chromatograms (EICs) |