Candidate Driver Analysis
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Documentation for package ‘CaDrA’ version 1.0.1
Help Pages
| BRCA_GISTIC_MUT_SIG | Genomic Data from TCGA BRCA MUT + GISTIC |
| CaDrA | CaDrA Search |
| calc_rowscore | Calculate row-wise scores of a given binary feature set based on a given scoring method |
| candidate_search | Candidate Search |
| CCLE_MUT_SCNA | Genomic Data from CCLE MUT + SCNA |
| CTNBB1_reporter | Transcriptional Activity of Beta-Catenin in Cancers |
| generate_permutations | Random permutation matrix generator |
| meta_plot | Candidate Drivers Search Plot |
| permutation_plot | Permutation Best Scores Plot |
| perm_res | Pre-computed permutation results for simulated data ('sim_FS') |
| prefilter_data | Pre-filter features |
| sim_FS | Simulated Genomic Data |
| sim_Scores | Simulated Input Scores |
| TAZYAP_BRCA_ACTIVITY | YAP/TAZ Activity in TCGA BRCA dataset |
| topn_best | Top 'N' Best Meta-Features |
| topn_list | Top-N Results for Simulated Data ('sim_FS') |
| topn_plot | Top 'N' Plot |