BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data

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Documentation for package ‘BubbleTree’ version 2.10.0

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Annotate-package Annotate
BTreePlotter-package BTreePlotter
BTreePredictor-package BTreePredictor
RBD-package RBD
TrackPlotter-package TrackPlotter
all.somatic.lst all.somatic.lst
allCall.lst allCall.lst
allCNV.lst allCNV.lst
allHetero.lst allHetero.lst
allRBD.lst allRBD.lst
annoByGenesAndCyto annoByGenesAndCyto
annoByGenesAndCyto-method annoByGenesAndCyto
Annotate Annotate
bafTrack bafTrack
bafTrack-method bafTrack
btcompare btcompare
btpredict btpredict
btpredict-method btpredict
BTreePlotter BTreePlotter
BTreePredictor BTreePredictor
cancer.genes.minus2 cancer.genes.minus2.rda
centromere.dat centromere.dat
cnv.gr cnv.gr
cyto.gr cyto.gr
drawBTree drawBTree
drawBTree-method drawBTree
drawBubbles drawBubbles
drawBubbles-method drawBubbles
drawFeatures drawFeatures
drawFeatures-method drawFeatures
gene.uni.clean.gr gene.uni.clean.gr
getTracks getTracks
heteroLociTrack heteroLociTrack
heteroLociTrack-method heteroLociTrack
hg19.seqinfo hg19.seqinfo.Rd
info info
info-method info
loadRBD loadRBD
loadRBD-method loadRBD
makeRBD makeRBD
makeRBD-method makeRBD
mergeSnpCnv mergeSnpCnv
mergeSnpCnv-method mergeSnpCnv
RBD RBD
RscoreTrack RscoreTrack
RscoreTrack-method RscoreTrack
saveXLS saveXLS
snp.gr snp.gr
trackBTree trackBTree
trackBTree-method trackBTree
TrackPlotter TrackPlotter
vol.genes vol.genes
xyTrack xyTrack
xyTrack-method xyTrack