Single-cell RNA sequencing data normalization

Documentation for package ‘bayNorm’ version 1.0.6

AdjustSIZE_fun	Adjust MME size estimate
bayNorm	A wrapper function of prior estimation and bayNorm function
bayNorm_sup	bayNorm with estimated parameters as input
BB_Fun	Estimating size for each gene by either 1D or 2D maximization of marginal distribution
BetaFun	Estimate capture efficiency for cells
DownSampling	Binomial downsampling
EstPrior	Estimate size and mu for Negative Binomial distribution for each gene using MME method
EXAMPLE_DATA_list	A subset of Grun et al (2014) data: 2i samples
NOISY_FUN	Noisy gene detection
noisy_gene_detection	A wrapper function for noisy gene detection from raw data. his produces synthetic control, performs bayNorm on both real cell data and synthetic controls and does noisy gene detection.
Prior_fun	A wrapper function of 'EstPrior' and 'AdjustSIZE_fun'
SyntheticControl	Generate synthetic control