BANDITS: Bayesian ANalysis of DIfferenTial Splicing

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Documentation for package ‘BANDITS’ version 1.10.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BANDITS-package	BANDITS: Bayesian ANalysis of DIfferenTial Splicing
BANDITS	BANDITS: Bayesian ANalysis of DIfferenTial Splicing
BANDITS_data	BANDITS_data class
BANDITS_data-class	BANDITS_data class
BANDITS_test	BANDITS_test class
BANDITS_test-class	BANDITS_test class
convergence	BANDITS_test class
convergence-method	BANDITS_test class
create_data	Create a 'BANDITS_data' object
eff_len_compute	Compute the median effective length of transcripts.
filter_genes	Filter lowly abundant genes.
filter_transcripts	Filter lowly abundant transcripts.
gene	BANDITS_test class
gene-method	BANDITS_test class
gene_tr_id	Gene-transcript matching
input_data	A 'BANDITS_data' object, generated with 'create_data'
plot_precision	Plot the log-precision estimates
plot_proportions	BANDITS_test class
plot_proportions-method	BANDITS_test class
precision	Estimates for the log-precision parameter, generated with 'prior_precision'
prior_precision	Infer an informative prior for the precision
results	Results of the DTU test, generated with 'test_DTU'
show-method	BANDITS_data class
show-method	BANDITS_test class
test_DTU	Perform differential splicing
top_genes	BANDITS_test class
top_genes-method	BANDITS_test class
top_transcripts	BANDITS_test class
top_transcripts-method	BANDITS_test class
transcript	BANDITS_test class
transcript-method	BANDITS_test class