ArrayExpressHTS | ExpressionSet for RNA-Seq experiment submitted in ArrayExpress and ENA |
ArrayExpressHTSFastQ | ExpressionSet for RNA-Seq raw data files |
getDefaultFilteringOptions | Functions to work with ArrayExpressHTS processing options |
getDefaultProcessingOptions | Functions to work with ArrayExpressHTS processing options |
getDefaultRCloudOptions | Functions to work with ArrayExpressHTS processing options |
getPipelineOption | Functions to work with package level options |
getPipelineOptions | Functions to work with package level options |
isRCloud | Check the code is running on R-Cloud |
prepareAnnotation | Prepare annotation data for the RNA-Seq Pipeline |
prepareReference | Prepare reference data for the RNA-Seq Pipeline |
setPipelineOptions | Functions to work with package level options |